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PDBsum entry 4x8v

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Hydrolase/hydrolase inhibitor PDB id
4x8v
Contents
Protein chains
254 a.a.
55 a.a.
Ligands
3Z9
SO4 ×3
GOL ×2
Metals
_CA
Waters ×140

References listed in PDB file
Key reference
Title Discovery of novel p1 groups for coagulation factor viia inhibition using fragment-Based screening.
Authors D.L.Cheney, J.M.Bozarth, W.J.Metzler, P.E.Morin, L.Mueller, J.A.Newitt, A.H.Nirschl, A.R.Rendina, J.K.Tamura, A.Wei, X.Wen, N.R.Wurtz, D.A.Seiffert, R.R.Wexler, E.S.Priestley.
Ref. J Med Chem, 2015, 58, 2799-2808. [DOI no: 10.1021/jm501982k]
PubMed id 25764119
Abstract
A multidisciplinary, fragment-based screening approach involving protein ensemble docking and biochemical and NMR assays is described. This approach led to the discovery of several structurally diverse, neutral surrogates for cationic factor VIIa P1 groups, which are generally associated with poor pharmacokinetic (PK) properties. Among the novel factor VIIa inhibitory fragments identified were aryl halides, lactams, and heterocycles. Crystallographic structures for several bound fragments were obtained, leading to the successful design of a potent factor VIIa inhibitor with a neutral lactam P1 and improved permeability.
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