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PDBsum entry 4x23
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Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 4x23 calculated with MOLE 2.0 PDB id
4x23
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.34 2.34 30.3 -1.98 -0.40 29.6 80 4 0 0 2 0 0 0  DC 72 I DG 73 I DC 74 I DT 75 I DG 70 J DC 72 J D
A 73 J DG 74 J DC 75 J
2 3.06 3.06 37.4 -2.32 -0.47 32.2 76 3 6 1 2 1 1 0  DC 80 I DC 111 I DT 112 I DA 33 J DG 41 J DT 42 J
DC 72 J DA 73 J
3 2.43 2.43 37.8 -2.29 -0.54 26.8 75 5 0 0 0 1 0 0  DA 39 I DT 112 I DG 114 I DT 115 I DG 29 J DG 30
J DA 31 J DG 32 J DA 33 J DC 34 J DT 105 J DG 106
J
4 3.09 3.09 47.3 -0.99 -0.73 11.2 72 3 0 0 0 0 0 0  DA 29 S DT 38 S DA 39 S DT 105 S DG 114 S DT 115
S DC 116 S DG 29 T DG 38 T DG 39 T DC 114 T DC
115 T
5 3.31 3.33 49.5 -1.16 -0.46 15.5 81 4 0 2 3 1 1 0  DT 142 I DC 143 I DA 1 J DT 2 J DA 73 J DA 49 S D
A 124 S DC 125 S DA 21 T DC 22 T DG 23 T
6 3.06 3.18 54.8 -1.07 -0.63 12.6 87 3 2 4 2 0 0 0  DC 111 I DT 112 I DA 33 J DG 41 J DT 42 J DG 52 J
DG 53 J DG 19 S DA 90 S DA 91 S DC 93 S DG 94 S
DT 51 T DG 53 T DC 54 T DG 55 T DA 62 T DC 63 T
DG 124 T
7 3.01 3.01 61.8 -2.21 -0.45 30.9 76 6 8 3 3 2 1 0  DC 80 I DC 72 J DA 73 J
8 2.88 2.97 63.4 -0.71 -0.68 7.5 91 2 1 6 2 1 0 0  DA 49 I DC 51 I DA 52 I DC 53 I DA 124 I DC 125 I
DG 126 I DA 19 J DC 26 J DC 27 J DA 90 J DA 91 J
DC 93 J DG 94 J DG 103 J DC 104 J DT 105 J
9 3.15 3.15 65.7 -0.92 -0.58 10.1 88 4 1 5 5 1 0 0  DA 49 I DA 124 I DC 125 I DG 126 I DA 21 J DC 22
J DG 23 J DC 26 J DC 27 J DG 103 J DC 104 J DT
105 J DA 1 T DT 2 T
10 2.98 3.18 67.7 -2.35 -0.62 21.3 89 11 3 11 3 0 1 0  DA 49 S DA 124 S DA 133 S DT 134 S DT 11 T DA 19
T DC 93 T
11 2.95 3.03 72.5 -1.27 -0.55 16.1 88 6 3 6 4 0 1 0  DA 59 S DA 60 S DA 61 S DC 62 S DG 63 S DC 64 S D
A 124 S DT 134 S DA 135 S DT 136 S DG 8 T DT 9 T
DA 19 T DA 80 T DC 81 T DT 83 T DG 84 T DC 85 T
DC 93 T
12 2.87 2.97 73.9 -0.94 -0.64 11.6 90 3 1 6 2 1 0 0  DA 39 I DA 49 I DC 51 I DA 52 I DC 53 I DA 124 I
DA 19 J DG 29 J DA 90 J DA 91 J DC 93 J DG 94 J
DG 103 J DC 104 J DT 105 J DG 106 J
13 3.18 3.20 76.1 -1.05 -0.57 12.4 87 5 1 5 5 1 0 0  DA 39 I DA 49 I DA 124 I DC 125 I DA 21 J DC 22 J
DG 23 J DG 29 J DG 103 J DC 104 J DT 105 J DG 106
J DA 1 T DT 2 T
14 2.95 3.02 84.4 -2.34 -0.50 22.5 85 13 2 7 2 1 2 0  DA 60 S DA 61 S DC 62 S DG 63 S DC 64 S DT 134 S
DT 136 S DG 8 T DT 9 T DA 10 T DT 11 T DA 80 T DC
81 T DT 83 T DG 84 T DC 85 T
15 2.85 2.92 86.4 -0.91 -0.57 8.9 87 5 0 8 5 2 0 0  DC 51 I DA 52 I DC 53 I DA 124 I DC 125 I DA 19 J
DA 21 J DC 22 J DG 23 J DA 90 J DA 91 J DC 93 J
DG 94 J DA 1 T DT 2 T
16 3.03 4.57 90.7 -1.34 -0.55 17.2 82 7 4 6 3 1 0 0  DG 52 J DG 53 J DG 19 S DA 90 S DA 91 S DC 93 S
DG 94 S DT 51 T DG 53 T DC 54 T DG 55 T DA 62 T
DC 63 T DG 124 T
17 3.13 3.15 95.2 -1.54 -0.33 22.4 77 9 2 1 2 1 1 0  DC 80 I DC 63 J DG 64 J DC 72 J DA 73 J DA 29 S
DT 104 S DT 105 S DG 39 T DA 40 T DG 41 T DT 42 T
DA 43 T DA 44 T
18 3.22 3.23 98.5 -1.06 -0.52 12.7 89 5 2 8 5 1 0 0  DG 19 I DG 21 I DG 22 I DC 23 I DC 24 I DT 32 I
DG 33 I DG 34 I DC 93 I DG 94 I DC 49 J DT 51 J
DG 52 J DG 53 J DA 117 J DT 118 J DT 119 J DG 120
J DA 121 J DG 122 J DG 124 J DG 125 J DG 19 S DC
93 S DG 94 S DT 51 T DG 52 T DG 53 T DG 124 T
19 2.87 2.96 101.1 -1.68 -0.53 17.2 86 11 3 10 5 0 1 0  DC 51 I DA 52 I DC 53 I DA 133 I DT 134 I DT 11 J
DA 19 J DA 73 J DA 90 J DA 91 J DC 93 J DG 94 J
20 3.15 3.14 103.3 -1.31 -0.35 19.8 80 10 4 2 4 1 1 0  DC 80 I DC 63 J DG 64 J DC 72 J DA 73 J DA 103 S
DT 104 S DT 42 T DA 43 T DA 44 T DC 49 T DG 124 T
21 2.97 4.55 108.4 -1.20 -0.57 15.5 83 6 4 5 4 2 0 0  DG 19 I DG 21 I DG 22 I DC 23 I DC 24 I DT 32 I
DG 33 I DG 34 I DC 93 I DG 94 I DC 49 J DT 51 J
DG 52 J DG 53 J DA 117 J DT 118 J DT 119 J DG 120
J DA 121 J DG 122 J DG 124 J DG 125 J DA 90 S DA
62 T DC 63 T
22 2.95 3.01 113.7 -2.35 -0.51 23.6 81 16 4 8 7 1 2 0  DC 80 I DC 72 J DA 73 J DA 60 S DA 61 S DC 62 S
DG 63 S DC 64 S DT 134 S DT 136 S DG 8 T DT 9 T D
A 10 T DT 11 T DA 80 T DC 81 T DT 83 T DG 84 T DC
85 T
23 3.10 3.25 113.2 -1.09 -0.42 16.0 81 8 4 5 5 2 1 0  DG 19 I DG 21 I DG 22 I DC 23 I DC 24 I DT 32 I
DG 33 I DG 34 I DC 80 I DA 90 I DA 91 I DC 93 I
DG 94 I DC 49 J DT 51 J DG 53 J DC 54 J DG 55 J D
A 62 J DC 63 J DC 72 J DA 73 J DA 117 J DT 118 J
DT 119 J DG 120 J DA 121 J DG 122 J DG 124 J DG
125 J DG 52 T DG 53 T
24 2.83 2.89 119.5 -1.52 -0.66 16.4 88 10 3 11 5 0 0 0  DC 51 I DA 52 I DC 53 I DA 133 I DT 134 I DT 11 J
DA 12 J DT 13 J DA 19 J DA 90 J DA 91 J DC 93 J
DG 94 J DA 124 S DA 133 S DT 134 S DT 11 T DA 12
T DT 13 T DA 19 T DC 93 T
25 2.36 2.39 123.2 -1.67 -0.54 19.6 79 12 1 4 3 1 1 0  DC 51 I DA 52 I DC 53 I DA 133 I DT 134 I DT 11 J
DA 12 J DT 13 J DA 19 J DA 90 J DA 91 J DC 93 J
DG 94 J DA 60 S DA 61 S DC 62 S DG 63 S DC 64 S
DT 134 S DT 136 S DG 8 T DT 9 T DA 10 T DT 11 T D
A 12 T DT 13 T DC 81 T DT 83 T DG 84 T DC 85 T
26 3.14 3.20 125.7 -0.88 -0.54 11.4 90 6 1 5 3 1 0 0  DG 21 I DG 22 I DC 23 I DC 24 I DT 32 I DG 33 I
DG 34 I DA 103 I DT 104 I DC 111 I DT 112 I DA 33
J DG 41 J DT 42 J DA 43 J DA 44 J DC 49 J DA 117
J DT 118 J DT 119 J DG 120 J DA 121 J DG 122 J DG
124 J DG 125 J
27 3.71 3.86 131.4 -1.58 -0.57 17.2 88 12 4 13 5 1 1 0  DA 39 I DA 49 I DA 124 I DA 133 I DT 134 I DT 11
J DA 19 J DG 29 J DA 73 J DC 93 J DG 103 J DC 104
J DT 105 J DG 106 J
28 3.23 3.24 167.9 -1.22 -0.64 13.9 88 9 3 9 4 0 0 0  DG 19 I DA 29 I DT 38 I DA 39 I DC 93 I DG 94 I D
A 103 I DT 104 I DG 114 I DT 115 I DG 29 J DG 38
J DG 39 J DC 49 J DT 51 J DG 52 J DG 53 J DT 105
J DG 106 J DC 114 J DC 115 J DG 124 J DG 19 S DC
93 S DG 94 S DT 51 T DG 52 T DG 53 T DG 124 T
29 1.19 1.19 176.3 -1.38 -0.57 14.6 83 10 4 7 4 1 0 0  DC 3 I DG 4 I DA 5 I DG 6 I DA 7 I DA 8 I DT 9 I
DC 10 I DC 11 I DG 19 I DC 93 I DG 94 I DT 51 J
DG 52 J DG 53 J DA 133 J DC 134 J DC 135 J DT 141
J DC 142 J DT 143 J DC 144 J DG 145 J DA 146 J DG
19 S DC 93 S DG 94 S DC 49 T DT 51 T DG 52 T DG
53 T DG 124 T
30 3.10 3.17 181.9 -0.90 -0.61 11.8 88 6 1 4 3 1 0 0  DG 21 I DG 22 I DC 23 I DC 24 I DA 29 I DT 32 I
DG 33 I DG 34 I DT 38 I DA 39 I DA 103 I DT 104 I
DG 114 I DT 115 I DG 29 J DG 38 J DG 39 J DC 49 J
DT 105 J DG 106 J DC 114 J DC 115 J DA 117 J DT
118 J DT 119 J DG 120 J DA 121 J DG 122 J DG 124
J DG 125 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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