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PDBsum entry 4w8f

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Pore analysis for: 4w8f calculated with MOLE 2.0 PDB id
4w8f
Pores calculated on whole structure Pores calculated excluding ligands

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27 pores, coloured by radius 26 pores, coloured by radius 26 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.00 3.45 30.3 -2.63 -0.44 27.6 80 10 5 3 0 3 0 0  
2 1.70 1.84 54.5 -1.32 -0.35 17.8 83 8 6 7 8 2 2 0  
3 1.39 1.79 83.7 -0.59 -0.34 11.2 85 7 8 9 14 1 1 0  
4 1.21 1.23 86.3 -1.74 -0.59 20.9 80 11 7 5 4 2 6 0  ANP 5001 A
5 1.52 1.57 134.6 -0.30 -0.03 13.0 83 13 9 17 17 11 6 0  ANP 5004 A
6 2.02 2.54 142.8 -2.36 -0.42 25.8 80 17 14 10 7 6 6 0  
7 1.35 1.43 150.9 -1.12 -0.19 17.3 82 14 9 28 11 13 3 1  
8 1.24 1.42 151.9 -1.58 -0.37 22.6 84 16 13 13 16 8 5 0  
9 1.31 1.44 177.4 -1.69 -0.38 26.4 82 21 19 12 18 7 3 0  
10 1.37 1.35 197.5 -1.99 -0.48 20.3 84 16 17 16 16 7 8 0  
11 1.58 1.58 219.9 -1.84 -0.49 20.3 85 16 19 17 15 7 4 0  
12 1.26 1.67 224.6 -1.23 -0.26 18.8 83 28 19 32 19 13 9 1  ANP 5004 A
13 1.47 1.53 234.1 -0.52 -0.11 13.6 84 13 15 21 30 13 12 3  ANP 5004 B
14 1.32 1.31 254.2 -1.56 -0.44 20.2 86 24 21 22 32 9 10 0  
15 1.20 1.91 246.4 -1.70 -0.43 24.4 83 24 19 17 26 8 5 0  
16 1.13 1.13 265.1 -0.91 -0.25 16.2 84 18 19 25 33 11 14 2  ANP 5004 B
17 1.13 3.19 276.8 -1.02 -0.30 15.2 85 18 14 29 29 10 9 0  
18 0.82 3.43 289.1 -1.80 -0.40 24.9 83 23 19 14 22 5 5 0  
19 1.63 1.91 288.2 -1.11 -0.26 17.1 85 25 23 25 22 12 5 0  ANP 5004 A
20 1.39 3.31 311.2 -0.91 -0.17 17.0 82 23 18 25 26 11 10 2  
21 1.29 2.34 304.7 -1.76 -0.43 24.9 82 22 25 16 25 5 7 0  
22 1.29 1.33 331.6 -1.19 -0.28 18.4 83 21 25 24 24 13 10 2  
23 1.45 2.38 342.7 -1.03 -0.25 19.7 82 34 21 22 38 6 4 0  
24 1.20 1.88 344.7 -1.14 -0.25 18.8 81 30 23 29 30 10 12 1  
25 1.17 1.13 398.6 -1.43 -0.34 18.4 83 33 24 45 32 15 14 1  
26 1.22 1.36 428.1 -1.25 -0.31 18.0 85 37 36 38 35 13 12 2  ANP 5004 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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