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PDBsum entry 4v7f
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Top Page protein dna_rna Protein-protein interface(s) tunnels links
Tunnel analysis for: 4v7f calculated with MOLE 2.0 PDB id
4v7f
Tunnels calculated on whole structure Tunnels calculated excluding ligands
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50 tunnels, coloured by tunnel radius 50 tunnels, coloured by tunnel radius 50 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.66 2.66 36.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 5 1 A 6 1 C 7 1 C 8 1 C 10 1 A 11 1 C 1574 1 C
141 2 C 142 2 U 143 2 G 144 2 U 145 2 U 146 2 U
147 2 G 148 2
2 2.66 2.66 36.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 10 1 A 11 1 A 12 1 A 13 1 C 15 1 A 16 1 C 141 2
C 142 2 U 143 2 G 144 2 U 145 2 U 146 2
3 2.25 2.25 45.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 67 1 C 68 1 U 270 1 C 271 1 G 301 1 C 315 1 U
316 1 A 317 1 A 318 1 A 319 1
4 2.66 2.66 48.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 3 1 U 4 1 A 6 1 C 7 1 C 8 1 C 10 1 A 11 1 G
1576 1 C 141 2 C 142 2 U 143 2 G 144 2 U 145 2 G
148 2 A 149 2 G 150 2 C 151 2
5 2.24 2.24 49.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 270 1 C 271 1 A 273 1 U 275 1 U 276 1 A 284 1 A
285 1 A 289 1 G 290 1
6 2.66 2.66 51.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 10 1 A 11 1 A 12 1 C 15 1 A 16 1 G 17 1 G 18 1
U 38 2 G 135 2 G 136 2 C 137 2 A 138 2 C 141 2 C
142 2 U 143 2 G 144 2
7 2.28 2.28 56.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 270 1 C 271 1 G 272 1 A 273 1 A 285 1 U 286 1 G
287 1 C 288 1 A 289 1 G 290 1 G 301 1 U 302 1 A
307 1
8 2.94 2.94 56.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 1533 1 A 1534 1 A 1537 1 G 1538 1 A 1539 1 U
1540 1 G 1542 1 G 1543 1 C 1548 1 C 1551 1 G 1552
1 U 1553 1 U 1554 1 C 1582 1 A 1583 1 A 1799 1 G
140 2 C 141 2 C 142 2
9 2.67 2.67 57.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 10 1 A 11 1 A 12 1 C 15 1 A 16 1 G 17 1 G 18 1
G 127 1 U 134 1 C 135 1 G 136 1 C 141 2 C 142 2 U
143 2 G 144 2
10 2.25 2.25 57.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 269 1 U 270 1 C 291 1 U 292 1 C 293 1 A 2432 1
U 2433 1 U 2434 1 G 2435 1 U 2506 1 C 2507 1
11 2.65 2.65 58.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 114 1 A 115 1 A 116 1 U 117 1 U 118 1 G 148 1 U
149 1 U 152 1 U 153 1 U 154 1 A 157 1 G 158 1 A
159 1 G 264 1 C 141 2 C 142 2 U 143 2
12 2.73 2.73 61.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 10 1 A 11 1 G 1542 1 C 1556 1 A 1557 1 A 1558 1
C 2512 1 U 2513 1 A 2515 1 U 2516 1 U 2517 1 C
2518 1 U 2587 1 G 2589 1 A 2590 1 A 2591 1 G 2592
1 C 141 2 C 142 2
13 2.71 2.71 61.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 10 1 A 11 1 G 1542 1 C 1556 1 A 1557 1 A 1558 1
U 2513 1 U 2514 1 A 2515 1 U 2516 1 C 2518 1 C
2526 1 G 2527 1 G 2584 1 G 2585 1 G 2586 1 U 2587
1 U 2588 1 G 2589 1 C 141 2 C 142 2
14 2.96 2.96 62.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 1540 1 G 1541 1 G 1542 1 G 1543 1 C 1548 1 C
1551 1 G 1552 1 U 1553 1 U 1554 1 U 1555 1 C 1556
1 A 1557 1 A 1559 1 G 1560 1 G 1561 1 C 1579 1 A
1580 1 C 1581 1 C 1582 1 U 1649 1 G 140 2 C 141 2
C 142 2
15 2.65 2.65 62.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 114 1 A 115 1 A 116 1 U 117 1 U 118 1 G 148 1 U
149 1 U 152 1 A 159 1 G 160 1 C 263 1 G 264 1 C
141 2 C 142 2 U 143 2
16 2.65 2.65 63.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 8 1 U 9 1 C 10 1 A 11 1 C 141 2 C 142 2 U 143 2
G 144 2 U 145 2 G 148 2 A 149 2 G 150 2 G 152 2
17 2.66 2.66 64.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 8 1 U 9 1 C 10 1 A 11 1 C 141 2 C 142 2 U 143 2
G 144 2 U 145 2 G 148 2 A 149 2 G 150 2 G 152 2 U
153 2 C 154 2
18 2.94 2.94 65.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 1540 1 G 1542 1 G 1543 1 G 1544 1 A 1545 1 C
1548 1 C 1550 1 C 1551 1 G 2160 1 A 2164 1 G 2165
1 A 2167 1 A 2168 1 U 2170 1 U 2426 1 U 2427 1 U
2428 1 A 2595 1 U 2596 1 U 2597 1 G 140 2 C 141 2
C 142 2
19 1.96 1.96 66.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 62 1 A 63 1 U 78 1 U 79 1 G 80 1 C 81 1 C 82 1
G 101 1 G 104 1 C 105 1 A 106 1 A 107 1 A 108 1 G
320 1 C 321 1 U 322 1 A 323 1 A 324 1 U 681 1 U
682 1 A 699 1 C 700 1
20 2.98 2.98 67.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 1531 1 U 1540 1 G 1541 1 G 1542 1 G 1543 1 C
1548 1 C 1551 1 G 1552 1 U 1553 1 U 1555 1 C 1556
1 A 1559 1 G 1560 1 C 1582 1 A 1583 1 U 1584 1 C
108 2 G 116 2 C 117 2 G 140 2 C 141 2 C 142 2
21 2.28 2.28 70.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 267 1 A 268 1 G 269 1 U 270 1 C 271 1 A 289 1 G
290 1 U 294 1 A 295 1 A 296 1 G 297 1 G 300 1
22 2.66 2.66 70.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 10 1 A 11 1 A 12 1 C 15 1 A 16 1 G 17 1 G 18 1
G 127 1 G 128 1 C 131 1 C 132 1 U 133 1 U 134 1 G
136 1 G 137 1 U 138 1 C 141 2 C 142 2 U 143 2 G
144 2
23 1.95 1.95 71.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 62 1 A 63 1 A 77 1 U 78 1 U 79 1 A 106 1 A 107
1 A 108 1 G 320 1 C 321 1 U 322 1 A 323 1 A 324 1
G 685 1 G 686 1
24 2.71 2.71 73.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 10 1 A 11 1 G 1542 1 C 1556 1 A 1557 1 A 1558 1
A 2511 1 C 2512 1 U 2513 1 A 2515 1 U 2516 1 C
2518 1 U 2587 1 U 2588 1 G 2589 1 A 2590 1 C 141
2 C 142 2
25 2.26 2.26 74.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 269 1 U 270 1 C 271 1 G 272 1 A 273 1 G 274 1 A
289 1 G 290 1 C 291 1 U 292 1 C 293 1 A 2213 1 A
2214 1 A 2215 1 G 2216 1 U 2217 1 A 2224 1 U 2225
1 U 2226 1 C 2227 1
26 2.66 2.66 74.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 10 1 A 11 1 A 12 1 C 15 1 A 16 1 G 17 1 G 18 1
C 125 1 U 126 1 G 127 1 G 136 1 G 137 1 G 171 1 U
250 1 C 141 2 C 142 2 U 143 2 G 144 2
27 2.95 2.95 75.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 1540 1 G 1542 1 G 1543 1 G 1544 1 A 1545 1 C
1548 1 C 1550 1 C 1551 1 A 2164 1 G 2165 1 A 2167
1 U 2170 1 U 2423 1 A 2424 1 G 2425 1 G 2606 1 G
2607 1 G 2608 1 A 2609 1 G 140 2 C 141 2 C 142 2
28 2.67 2.67 78.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 10 1 A 11 1 G 1542 1 C 1556 1 A 1557 1 A 1558 1
A 2515 1 U 2516 1 C 2518 1 A 2519 1 A 2520 1 G
2527 1 C 2546 1 A 2547 1 U 2587 1 U 2588 1 G 2589
1 C 141 2 C 142 2
29 2.97 2.97 79.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 807 1 A 808 1 U 811 1 G 812 1 G 813 1 G 907 1 A
926 1 C 927 1 C 928 1 A 929 1 U 1540 1 G 1542 1 G
1543 1 G 1544 1 A 1545 1 C 1548 1 U 1549 1 C 1550
1 G 140 2 C 141 2 C 142 2
30 1.97 1.97 80.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 269 1 U 270 1 C 271 1 G 272 1 A 273 1 G 274 1 A
289 1 G 290 1 C 291 1 U 292 1 C 293 1 U 309 1 U
310 1 A 2222 1 A 2223 1 A 2224 1
31 2.94 2.94 81.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 358 1 G 813 1 U 814 1 G 815 1 A 906 1 G 907 1 A
920 1 A 921 1 A 926 1 C 927 1 U 1540 1 G 1542 1 G
1543 1 G 1544 1 A 1545 1 C 1548 1 U 1549 1 C 1550
1 G 140 2 C 141 2 C 142 2
32 2.96 2.96 85.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 1540 1 G 1542 1 G 1543 1 G 1544 1 A 1545 1 C
1548 1 C 1550 1 C 1551 1 A 2164 1 G 2165 1 A 2167
1 A 2168 1 U 2170 1 U 2423 1 A 2424 1 G 2425 1 U
2426 1 U 2427 1 U 2597 1 G 2598 1 C 2600 1 A 2601
1 G 2602 1 G 2603 1 U 2604 1 G 140 2 C 141 2 C
142 2
33 3.00 3.00 84.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 32 1 G 33 1 A 34 1 A 35 1 C 36 1 U 38 1 A 39 1
C 42 1 A 43 1 A 45 1 U 46 1 C 47 1 A 48 1 U 50 1
A 51 1 A 52 1 G 53 1 C 54 1 G 92 1 U 811 1 G 812
1 C 931 1 U 1540 1 G 1542 1 G 1543 1 G 1544 1 A
1545 1 G 1547 1 C 1548 1 U 1549 1 C 1550 1 G 140
2 C 141 2 C 142 2
34 1.72 1.72 89.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 1540 1 G 1542 1 G 1543 1 G 1544 1 A 1545 1 C
1548 1 C 1550 1 C 1551 1 A 2164 1 G 2165 1 A 2167
1 A 2168 1 U 2170 1 A 2232 1 A 2233 1 U 2426 1 U
2427 1 U 2428 1 G 2429 1 U 2597 1 G 2598 1 U 2599
1 C 2600 1 A 2601 1 G 2602 1 G 140 2 C 141 2 C
142 2
35 2.97 2.97 90.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 1540 1 G 1542 1 G 1543 1 G 1544 1 A 1545 1 C
1548 1 C 1550 1 C 1551 1 A 2164 1 G 2165 1 A 2167
1 A 2168 1 U 2170 1 U 2426 1 U 2427 1 U 2428 1 G
2429 1 A 2430 1 C 2431 1 U 2433 1 U 2508 1 C 2594
1 A 2595 1 U 2596 1 U 2597 1 G 2598 1 G 140 2 C
141 2 C 142 2
36 3.03 3.03 90.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 20 1 G 21 1 G 22 1 A 23 1 G 24 1 U 25 1 G 58 1
G 59 1 C 180 1 U 181 1 U 328 1 G 330 1 G 331 1 C
332 1 G 333 1 A 334 1 U 1540 1 G 1541 1 G 1542 1
G 31 2 C 32 2 C 35 2 G 36 2 A 37 2 A 105 2 U 139
2 G 140 2 C 141 2 C 142 2
37 2.70 2.70 95.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 20 1 G 21 1 G 22 1 A 23 1 U 354 1 A 355 1 C 356
1 A 357 1 G 358 1 G 360 1 A 361 1 U 1540 1 G 1541
1 G 1542 1 C 1846 1 A 1847 1 G 36 2 A 37 2 A 40 2
A 41 2 G 42 2 G 103 2 A 104 2 A 105 2 U 139 2 G
140 2 C 141 2 C 142 2
38 2.60 2.60 104.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 10 1 A 11 1 A 12 1 C 15 1 G 17 1 G 18 1 U 19 1
A 37 2 G 39 2 A 40 2 A 43 2 A 44 2 C 45 2 G 46 2
C 47 2 G 51 2 A 52 2 A 53 2 A 54 2 U 55 2 G 56 2
C 57 2 G 58 2 C 62 2 C 99 2 U 100 2 U 102 2 A 105
2 C 106 2 A 138 2 U 139 2 G 140 2 C 141 2 C 142 2
U 143 2 G 144 2
39 2.69 2.69 109.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 10 1 A 11 1 A 12 1 C 15 1 G 17 1 G 18 1 U 19 1
G 1519 1 G 1520 1 A 37 2 G 39 2 A 40 2 A 43 2 A
44 2 C 45 2 G 46 2 C 47 2 C 50 2 G 58 2 A 59 2 C
99 2 U 100 2 U 102 2 A 105 2 C 106 2 A 138 2 U
139 2 G 140 2 C 141 2 C 142 2 U 143 2 G 144 2
40 2.53 2.53 117.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 10 1 A 11 1 A 12 1 C 15 1 G 17 1 G 18 1 U 19 1
A 355 1 C 356 1 U 1494 1 C 1505 1 A 1515 1 C 1516
1 G 1517 1 A 37 2 G 39 2 A 40 2 A 43 2 A 44 2 C
45 2 A 53 2 A 54 2 C 99 2 U 100 2 U 102 2 A 105 2
C 106 2 A 138 2 U 139 2 G 140 2 C 141 2 C 142 2 U
143 2 G 144 2
41 2.96 2.96 136.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 25 1 A 26 1 C 27 1 C 28 1 C 29 1 G 30 1 C 31 1
U 32 1 G 33 1 A 51 1 A 52 1 G 53 1 C 54 1 C 663 1
U 664 1 A 665 1 C 667 1 G 668 1 U 669 1 C 670 1 U
671 1 A 672 1 A 791 1 G 792 1 C 793 1 U 796 1 G
799 1 G 800 1 A 801 1 C 931 1 A 933 1 C 1426 1 U
1540 1 G 1542 1 G 1543 1 G 1544 1 A 1545 1 G 1547
1 C 1548 1 U 1549 1 C 1550 1 G 140 2 C 141 2 C
142 2
42 1.41 1.41 17.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
43 1.40 1.40 17.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
44 1.41 1.41 28.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
45 2.41 2.41 16.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
46 2.37 2.37 16.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
47 1.64 1.64 19.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
48 2.46 2.46 20.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
49 1.94 1.94 25.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
50 2.10 2.10 27.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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