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PDBsum entry 4v11

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protein ligands metals links
Signaling protein PDB id
4v11

 

 

 

 

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Contents
Protein chain
150 a.a.
Ligands
SER-ASP-ALA-TPO-
GLU-GLY-HIS-ASP-
GLU-ASP
GOL
Metals
_CA ×3
Waters ×147
PDB id:
4v11
Name: Signaling protein
Title: Structure of synaptotagmin-1 with sv2a peptide phosphorylated at thr84
Structure: Synaptotagmin-1. Chain: a. Fragment: c2b domain, unp residues 273-422. Synonym: synaptotagmin i, syti, p65. Engineered: yes. Synaptic vesicle glycoprotein 2a. Chain: b. Fragment: unp residues 81-90. Synonym: sv2a.
Source: Homo sapiens. Human. Organism_taxid: 9606. Expressed in: escherichia coli. Expression_system_taxid: 469008. Synthetic: yes. Organism_taxid: 9606
Resolution:
1.95Å     R-factor:   0.153     R-free:   0.196
Authors: N.Zhang,S.L.Gordon,M.J.Fritsch,N.Esoof,D.Campbell,R.Gourlay, S.Velupillai,T.Macartney,M.Peggie,D.M.F.Vanaalten,M.A.Cousin, D.R.Alessi
Key ref: N.Zhang et al. (2015). Phosphorylation of synaptic vesicle protein 2A at Thr84 by casein kinase 1 family kinases controls the specific retrieval of synaptotagmin-1. J Neurosci, 35, 2492-2507. PubMed id: 25673844 DOI: 10.1523/JNEUROSCI.4248-14.2015
Date:
22-Sep-14     Release date:   25-Feb-15    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P21579  (SYT1_HUMAN) -  Synaptotagmin-1 from Homo sapiens
Seq:
Struc:
422 a.a.
150 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 

 
DOI no: 10.1523/JNEUROSCI.4248-14.2015 J Neurosci 35:2492-2507 (2015)
PubMed id: 25673844  
 
 
Phosphorylation of synaptic vesicle protein 2A at Thr84 by casein kinase 1 family kinases controls the specific retrieval of synaptotagmin-1.
N.Zhang, S.L.Gordon, M.J.Fritsch, N.Esoof, D.G.Campbell, R.Gourlay, S.Velupillai, T.Macartney, M.Peggie, D.M.van Aalten, M.A.Cousin, D.R.Alessi.
 
  ABSTRACT  
 
Synaptic vesicle protein 2A (SV2A) is a ubiquitous component of synaptic vesicles (SVs). It has roles in both SV trafficking and neurotransmitter release. We demonstrate that Casein kinase 1 family members, including isoforms of Tau-tubulin protein kinases (TTBK1 and TTBK2), phosphorylate human SV2A at two constellations of residues, namely Cluster-1 (Ser42, Ser45, and Ser47) and Cluster-2 (Ser80, Ser81, and Thr84). These residues are also phosphorylated in vivo, and the phosphorylation of Thr84 within Cluster-2 is essential for triggering binding to the C2B domain of human synaptotagmin-1. We show by crystallographic and other analyses that the phosphorylated Thr84 residue binds to a pocket formed by three conserved Lys residues (Lys314, Lys326, and Lys328) on the surface of the synaptotagmin-1 C2B domain. Finally, we observed dysfunctional synaptotagmin-1 retrieval during SV endocytosis by ablating its phospho-dependent interaction with SV2A, knockdown of SV2A, or rescue with a phosphorylation-null Thr84 SV2A mutant in primary cultures of mouse neurons. This study reveals fundamental details of how phosphorylation of Thr84 on SV2A controls its interaction with synaptotagmin-1 and implicates SV2A as a phospho-dependent chaperone required for the specific retrieval of synaptotagmin-1 during SV endocytosis.
 

 

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