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PDBsum entry 4um8
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Tunnel analysis for: 4um8 calculated with  MOLE 2.0
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PDB id
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4um8
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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5 tunnels,
coloured by tunnel radius |
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10 tunnels,
coloured by
tunnel radius
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10 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.40 |
1.40 |
30.5 |
-0.84 |
-0.47 |
15.1 |
78 |
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2 |
3 |
1 |
4 |
0 |
1 |
0 |
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2 |
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1.22 |
1.21 |
35.1 |
-0.18 |
-0.06 |
7.6 |
68 |
1 |
0 |
1 |
8 |
2 |
1 |
0 |
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3 |
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1.28 |
1.42 |
18.9 |
-0.87 |
0.01 |
16.5 |
75 |
2 |
3 |
1 |
1 |
4 |
1 |
0 |
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4 |
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1.28 |
1.44 |
22.2 |
-0.82 |
-0.44 |
7.6 |
80 |
0 |
2 |
3 |
1 |
3 |
1 |
0 |
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5 |
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1.28 |
1.43 |
35.0 |
-0.66 |
-0.17 |
13.3 |
78 |
1 |
4 |
2 |
1 |
4 |
0 |
0 |
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6 |
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1.90 |
2.09 |
34.7 |
-0.88 |
-0.37 |
12.2 |
81 |
4 |
2 |
4 |
3 |
3 |
2 |
0 |
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7 |
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1.10 |
1.66 |
27.3 |
0.72 |
0.08 |
5.1 |
81 |
1 |
0 |
0 |
6 |
0 |
2 |
0 |
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8 |
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1.09 |
2.52 |
27.0 |
3.07 |
0.94 |
2.5 |
78 |
0 |
2 |
1 |
13 |
0 |
1 |
0 |
CAC 1442 B
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9 |
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1.30 |
1.57 |
17.3 |
1.60 |
0.33 |
3.3 |
82 |
1 |
0 |
0 |
6 |
1 |
0 |
0 |
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10 |
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2.21 |
3.04 |
20.3 |
-1.16 |
-0.45 |
13.3 |
81 |
2 |
2 |
1 |
2 |
0 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program