PDBsum entry 4u4j Go to PDB code:  Pore analysis for: 4u4j calculated with MOLE 2.0 PDB id 4u4j Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   18 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.22 32.5 -1.13 -0.48 15.7 83 4 2 3 2 2 1 0   2 1.68 1.71 39.1 -1.70 -0.38 17.6 85 6 4 6 9 1 2 0   3 2.37 2.37 47.0 -1.38 -0.36 21.9 86 4 3 2 3 1 3 0   4 1.20 2.64 48.9 0.30 0.09 10.7 75 1 4 4 10 1 0 0   5 1.89 2.10 51.8 -2.10 -0.28 18.4 80 5 4 4 7 6 3 0   6 3.23 3.39 52.9 -1.43 -0.33 17.5 83 3 5 3 5 2 1 0   7 2.75 2.91 55.9 -1.97 -0.58 28.2 87 6 7 2 6 0 0 0   8 1.19 1.19 67.9 0.66 0.11 6.4 75 1 4 9 12 1 3 0   9 1.36 1.36 70.0 -0.80 -0.20 17.1 87 2 6 5 8 1 4 0   10 1.21 1.21 87.5 -0.89 -0.14 14.2 80 10 9 8 11 5 5 0   11 2.06 2.16 90.7 -1.34 -0.19 17.2 80 9 8 8 9 5 3 0   12 1.14 1.14 108.0 -1.50 -0.40 15.6 83 7 6 12 7 5 3 0   13 2.06 2.16 116.7 -1.73 -0.33 25.7 79 12 6 8 6 3 0 0   14 1.19 1.20 120.8 -1.03 -0.34 12.8 81 13 6 14 10 4 4 0   15 1.12 1.13 124.0 -1.47 -0.41 15.4 81 12 6 14 8 4 2 0   16 2.20 2.39 133.4 -1.51 -0.34 18.1 83 14 12 10 9 5 3 0   17 1.26 1.51 148.8 -0.43 -0.17 12.6 76 8 8 6 9 5 0 0   18 1.11 1.11 161.3 -1.58 -0.46 17.3 84 14 10 15 8 4 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.