spacer
spacer

PDBsum entry 4tnx

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 4tnx calculated with MOLE 2.0 PDB id
4tnx
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.14 1.27 74.7 -1.89 -0.25 21.9 81 10 4 5 5 2 1 2  
2 1.11 1.10 87.1 -1.26 -0.21 16.1 85 8 5 7 6 4 2 0  
3 1.14 1.32 87.2 -2.13 -0.46 18.2 82 14 5 9 6 3 0 2  
4 1.20 1.21 98.1 -1.25 -0.32 14.8 87 11 4 10 12 5 0 0  
5 1.64 1.64 16.9 -2.39 -0.47 27.6 76 4 2 0 0 2 1 0  
6 1.12 2.20 19.3 -0.08 -0.10 15.2 86 1 1 1 2 0 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer