PDBsum entry 4tnm

Protein binding

PDB id: 4tnm

Contents

Protein chain

407 a.a.

PDB id:

4tnm

Name:

Protein binding

Title:

Crystal structure of arabidopsis importin-alpha3 armadillo repeat domain

Structure:

Importin subunit alpha. Chain: a. Fragment: armadillo repeat domian. Engineered: yes

Source:

Arabidopsis thaliana. Mouse-ear cress. Organism_taxid: 3702. Gene: mos6, at4g02150. Expressed in: escherichia coli. Expression_system_taxid: 562.

Resolution:

2.90Å R-factor: 0.221 R-free: 0.263

Authors:

L.Wirthmueller,M.Banfield

Key ref:

L.Wirthmueller et al. (2015). Probing formation of cargo/importin-α transport complexes in plant cells using a pathogen effector. Plant J, 81, 40-52. PubMed id: 25284001 DOI: 10.1111/tpj.12691

Date:

04-Jun-14 Release date: 08-Oct-14

Protein chain

O04294  (IMPA3_ARATH) -  Importin subunit alpha-3 from Arabidopsis thaliana

Seq: 531 a.a.

Struc: 407 a.a.

Enzyme reactions

• Enzyme class: E.C.?

DOI no: 10.1111/tpj.12691

Plant J 81:40-52 (2015)

PubMed id: 25284001

Probing formation of cargo/importin-α transport complexes in plant cells using a pathogen effector.

L.Wirthmueller, C.Roth, G.Fabro, M.C.Caillaud, G.Rallapalli, S.Asai, J.Sklenar, A.M.Jones, M.Wiermer, J.D.Jones, M.J.Banfield.

ABSTRACT

Importin-αs are essential adapter proteins that recruit cytoplasmic proteins destined for active nuclear import to the nuclear transport machinery. Cargo proteins interact with the importin-α armadillo repeat domain via nuclear localization sequences (NLSs), short amino acids motifs enriched in Lys and Arg residues. Plant genomes typically encode several importin-α paralogs that can have both specific and partially redundant functions. Although some cargos are preferentially imported by a distinct importin-α it remains unknown how this specificity is generated and to what extent cargos compete for binding to nuclear transport receptors. Here we report that the effector protein HaRxL106 from the oomycete pathogen Hyaloperonospora arabidopsidis co-opts the host cell's nuclear import machinery. We use HaRxL106 as a probe to determine redundant and specific functions of importin-α paralogs from Arabidopsis thaliana. A crystal structure of the importin-α3/MOS6 armadillo repeat domain suggests that five of the six Arabidopsis importin-αs expressed in rosette leaves have an almost identical NLS-binding site. Comparison of the importin-α binding affinities of HaRxL106 and other cargos in vitro and in plant cells suggests that relatively small affinity differences in vitro affect the rate of transport complex formation in vivo. Our results suggest that cargo affinity for importin-α, sequence variation at the importin-α NLS-binding sites and tissue-specific expression levels of importin-αs determine formation of cargo/importin-α transport complexes in plant cells.