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PDBsum entry 4tmu

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Hydrolase/DNA PDB id
4tmu
Contents
Protein chain
511 a.a.
DNA/RNA
Metals
_ZN
Waters ×302

References listed in PDB file
Key reference
Title Structural mechanisms of DNA binding and unwinding in bacterial recq helicases.
Authors K.A.Manthei, M.C.Hill, J.E.Burke, S.E.Butcher, J.L.Keck.
Ref. Proc Natl Acad Sci U S A, 2015, 112, 4292-4297. [DOI no: 10.1073/pnas.1416746112]
PubMed id 25831501
Abstract
RecQ helicases unwind remarkably diverse DNA structures as key components of many cellular processes. How RecQ enzymes accommodate different substrates in a unified mechanism that couples ATP hydrolysis to DNA unwinding is unknown. Here, the X-ray crystal structure of the Cronobacter sakazakii RecQ catalytic core domain bound to duplex DNA with a 3' single-stranded extension identifies two DNA-dependent conformational rearrangements: a winged-helix domain pivots ∼90° to close onto duplex DNA, and a conserved aromatic-rich loop is remodeled to bind ssDNA. These changes coincide with a restructuring of the RecQ ATPase active site that positions catalytic residues for ATP hydrolysis. Complex formation also induces a tight bend in the DNA and melts a portion of the duplex. This bending, coupled with translocation, could provide RecQ with a mechanism for unwinding duplex and other DNA structures.
PROCHECK
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