PDBsum entry 4rtd Go to PDB code:  Pore analysis for: 4rtd calculated with MOLE 2.0 PDB id 4rtd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.07 2.07 26.8 0.07 0.25 4.0 80 1 1 6 5 5 2 0   2 1.57 2.16 34.8 -1.15 0.23 8.9 73 2 2 3 4 2 4 0   3 1.50 1.66 72.5 0.39 -0.11 5.7 79 4 2 9 18 1 2 0   4 1.16 1.17 81.5 -1.46 -0.47 16.9 82 11 8 6 7 1 6 0  MSE 1027 A 5 1.18 1.18 80.3 -2.15 -0.68 22.4 84 5 7 8 5 1 3 0   6 1.17 1.44 83.4 -1.69 -0.46 22.3 85 9 5 6 5 1 1 0  MSE 483 A 7 1.34 1.54 129.1 -0.66 -0.31 12.4 80 11 10 12 23 2 3 0  MSE 1027 A 8 1.23 1.38 166.1 -1.14 -0.46 12.5 82 13 8 14 14 3 7 0  MSE 1027 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.