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PDBsum entry 4riy

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4riy calculated with MOLE 2.0 PDB id
4riy
Pores calculated on whole structure Pores calculated excluding ligands

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7 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.33 2.33 32.1 -2.03 -0.33 28.1 75 8 5 1 2 4 0 0  
2 1.31 2.97 33.4 -0.68 -0.09 21.5 85 3 6 2 7 0 0 0  
3 2.34 2.35 50.5 -2.23 -0.34 31.5 74 10 7 1 3 4 0 0  
4 1.94 4.04 57.1 -2.60 -0.38 37.6 81 13 8 0 3 1 0 0  
5 2.12 3.01 67.0 -2.42 -0.44 25.1 84 9 5 8 4 1 3 0  
6 2.11 2.17 68.2 -2.44 -0.40 26.6 85 8 5 7 5 2 1 0  
7 2.13 3.01 100.0 -2.43 -0.46 32.1 81 15 11 4 4 2 0 0  
8 2.41 2.66 101.5 -2.02 -0.40 31.3 79 14 13 1 4 2 0 0  ADP 1001 D MG 1002 D
9 1.20 1.38 186.4 -2.21 -0.40 33.4 81 25 18 2 13 3 0 0  
10 1.25 1.57 25.6 0.22 -0.16 8.0 76 2 1 3 4 0 0 1  ANP 1101 A
11 1.35 1.55 25.6 -0.46 -0.28 14.7 72 1 3 1 3 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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