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PDBsum entry 4r8p
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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 4r8p calculated with MOLE 2.0 PDB id
4r8p
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 31 pores, coloured by radius 31 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.00 3.09 36.5 -1.95 -0.43 23.3 79 6 1 0 1 1 0 0  DA -45 I DA -44 I DT -43 I DT -42 I DG -41 I DG -
40 I DT -39 I DT 31 I DG -
35 J DG 38 J DA 39 J DC 40 J DC 41 J
2 2.34 2.34 48.1 -1.81 -0.62 21.7 89 5 1 2 2 0 1 0  DC -71 I DC -64 I DC -63 I DC -
62 I DT 67 J DC 68 J DT 69 J
3 3.52 3.52 49.3 -0.79 -0.76 2.9 98 0 0 3 1 0 1 0  DG -7 I DT -6 I DA -
5 I DT 68 I DC 69 I DC 70 I DG 71 I DA 72 I DT -
72 J DG -70 J DG -69 J DA -68 J
4 3.05 3.21 50.3 -1.43 -0.71 6.5 92 2 1 4 1 0 1 0  DA -5 I DC -4 I DG -3 I DC -2 I DG -
1 I DC 0 I DT 1 I DG 2 I DT 3 I DT 68 I DC 69 I
DC 70 I DT -72 J DG -70 J DG -5 J DG -4 J DA -
3 J DC -2 J DA -1 J DG 0 J DC 1 J DG 2 J
5 1.96 2.30 53.7 -0.26 -0.39 7.8 84 3 0 1 4 0 1 1  DC -71 I DT 1 I DG 2 I DT 3 I DG -4 J DA -
3 J DT 67 J DC 68 J DT 69 J
6 2.37 2.37 58.2 -1.93 -0.63 22.0 89 6 1 3 1 0 1 0  DC -71 I DG -70 I DT -65 I DC -64 I DC -
63 I DA 59 J DC 60 J DT 67 J DC 68 J DT 69 J DA
72 J
7 3.97 4.33 59.0 -0.99 -0.64 10.7 89 4 2 7 3 1 0 0  DT -65 I DG -55 I DA -
45 I DC 19 I DA 29 I DT 30 I DT 31 I DC -25 J DA -
14 J DC 60 J
8 1.38 1.38 59.8 -1.44 -0.76 17.0 77 4 2 0 0 0 0 0  DA -45 I DG -37 I DT -36 I DA -35 I DG -34 I DA -
33 I DC -32 I DA -31 I DT 31 I DG 40 I DG -
35 J DT 35 J DA 36 J DC 37 J DA 39 J DC 40 J DC
41 J
9 3.29 3.54 63.3 -2.14 -0.48 26.2 84 7 1 2 2 0 1 0  DA 59 I DT 60 I DA 61 I DT 62 I DT 68 I DC 69 I
DG -70 J DA -64 J DT -63 J
10 2.98 3.72 63.2 -1.69 -0.61 15.0 85 6 3 8 1 0 3 0  DC -64 I DC -63 I DC -
62 I DT 1 I DG 2 I DT 3 I DG -5 J DG -4 J DA -3 J
11 2.46 2.45 63.6 -0.62 -0.42 9.7 90 3 1 4 4 1 0 0  DA -25 I DA -15 I DA -
14 I DA 50 I DC 51 I DT 60 I DA 61 I DT 62 I DA -
55 J DA -53 J DC -52 J DG -51 J DT -50 J DC 19 J
12 1.29 1.51 66.4 1.11 0.23 3.6 80 1 0 1 6 1 3 0  
13 2.07 2.07 66.8 -0.76 -0.75 3.4 97 1 0 3 1 0 1 0  DG -7 I DT -6 I DA -
5 I DT 68 I DC 69 I DC 70 I DG 71 I DA 72 I DT -
72 J DG -70 J DA -68 J
14 2.93 2.93 70.4 -1.93 -0.51 23.3 81 9 2 1 1 1 0 0  DA -45 I DA -
35 I DT 31 I DC 37 I DT 38 I DG 40 I DT 41 I DG -
45 J DG -44 J DA -43 J DG -42 J DA -41 J DC -
40 J DG -35 J DC 40 J
15 2.99 3.01 73.5 -1.75 -0.44 25.2 73 8 2 1 3 0 2 1  DC -4 I DG -3 I DC -2 I DG -
1 I DC 0 I DT 1 I DG 2 I DT 3 I DA 59 I DT 60 I D
A 61 I DT 62 I DT 68 I DA -64 J DT -63 J DG -
5 J DG -4 J DA -3 J DC -2 J DA -1 J DG 0 J DC 1 J
16 2.07 2.07 73.6 -0.89 -0.69 7.9 68 3 0 0 0 0 2 0  DG -7 I DT -6 I DA -5 I DC -4 I DG -3 I DC -
2 I DG -
1 I DC 0 I DT 1 I DG 2 I DT 3 I DC 70 I DG 71 I D
A 72 I DT -72 J DA -68 J DG -5 J DG -4 J DA -
3 J DC -2 J DA -1 J DG 0 J DC 1 J DG 2 J
17 1.38 1.38 77.0 -1.68 -0.45 20.1 82 5 1 0 1 1 0 0  DG -37 I DT -36 I DA -35 I DG -34 I DA -33 I DC -
32 I DA -31 I DC 37 I DT 38 I DG 40 I DT 41 I DG -
45 J DG -44 J DA -43 J DG -42 J DA -41 J DC -
40 J DT -
32 J DT 35 J DA 36 J DC 37 J DA 39 J DC 40 J
18 2.54 2.54 89.9 -1.56 -0.51 19.9 86 11 3 6 4 2 0 0  DA -45 I DA -35 I DT 31 I DG 40 I DA 50 I DA -
53 J DC -52 J DG -51 J DT -50 J DG -45 J DG -
35 J DC 40 J
19 2.47 2.47 91.3 -1.46 -0.28 18.6 86 10 1 5 5 3 0 0  DA -
35 I DC 37 I DT 38 I DG 40 I DT 41 I DA 50 I DA -
53 J DC -52 J DG -51 J DT -50 J DG -45 J DG -
44 J DA -43 J DG -42 J DA -41 J DC -40 J DT -32 J
20 3.29 3.65 91.4 -1.83 -0.57 20.4 82 6 1 4 1 0 2 0  DG -7 I DT -6 I DA -
5 I DA 59 I DT 60 I DA 61 I DT 62 I DT 68 I DC 69
I DC 70 I DG 71 I DA 72 I DT -72 J DA -68 J DT -
67 J DA -64 J DT -63 J
21 2.42 2.70 95.7 -2.07 -0.57 24.1 82 16 6 6 5 0 2 0  DT 68 I DC 69 I DG -70 J
22 2.54 2.66 102.1 -2.39 -0.60 25.5 82 16 8 7 3 0 2 0  DA 59 I DT 60 I DA 61 I DT 62 I DT -63 J
23 2.91 2.91 105.9 -1.52 -0.36 19.2 85 11 2 6 3 3 0 0  DA -35 I DA -25 I DA -
14 I DC 37 I DT 38 I DG 40 I DT 41 I DT 60 I DA
61 I DA -55 J DG -45 J DG -44 J DA -43 J DG -
42 J DA -41 J DC -40 J DT -32 J DC 19 J
24 2.07 3.93 105.2 -2.15 -0.42 25.6 81 19 5 8 6 4 1 0  DA 50 I DA -53 J DC -52 J DG -51 J DT -50 J
25 3.57 3.72 104.6 -1.59 -0.57 19.8 84 12 4 7 2 2 0 0  DA -45 I DA -35 I DA -25 I DA -
14 I DT 31 I DG 40 I DT 60 I DA 61 I DA -55 J DG -
45 J DG -35 J DC 19 J DC 40 J
26 2.08 3.77 120.5 -2.62 -0.39 32.0 78 23 5 4 3 3 1 0  DA -35 I DC 37 I DT 38 I DG 40 I DT 41 I DG -
45 J DG -44 J DA -43 J DG -42 J DA -41 J DC -40 J
27 3.16 3.40 122.7 -1.74 -0.55 18.9 84 17 6 8 6 0 3 0  DC -64 I DC -63 I DC -62 I DT 68 I DC 69 I DG -
70 J
28 1.69 1.82 125.5 -2.33 -0.52 28.4 84 17 7 8 4 0 1 1  DT 1 I DG 2 I DT 3 I DG -5 J DG -4 J DA -3 J
29 3.18 3.36 129.1 -2.00 -0.57 20.4 84 17 8 10 4 0 3 0  DC -64 I DC -63 I DC -
62 I DA 59 I DT 60 I DA 61 I DT 62 I DT -63 J
30 1.71 1.83 127.4 -2.27 -0.53 27.0 82 18 6 6 3 0 2 1  DC -64 I DC -63 I DC -62 I
31 1.64 1.90 56.5 -0.40 -0.01 16.2 85 3 3 3 7 1 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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