 |
PDBsum entry 4qvv
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4qvv calculated with MOLE 2.0
|
PDB id
|
|
|
|
4qvv
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
30 pores,
coloured by radius |
 |
30 pores,
coloured by radius
|
30 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.34 |
1.43 |
43.7 |
-2.21 |
-0.51 |
27.1 |
79 |
 |
6 |
7 |
2 |
4 |
2 |
0 |
0 |
 |
|
 |
 |
2 |
 |
1.54 |
1.54 |
74.9 |
-2.66 |
-0.57 |
29.8 |
80 |
9 |
10 |
3 |
2 |
3 |
1 |
0 |
|
 |
3 |
 |
1.47 |
1.51 |
79.2 |
-2.23 |
-0.62 |
24.9 |
83 |
4 |
7 |
4 |
1 |
2 |
0 |
0 |
|
 |
4 |
 |
1.44 |
1.46 |
87.0 |
-2.42 |
-0.42 |
23.7 |
76 |
9 |
8 |
4 |
3 |
5 |
1 |
0 |
|
 |
5 |
 |
1.71 |
1.73 |
113.4 |
-1.80 |
-0.33 |
22.8 |
77 |
16 |
9 |
7 |
8 |
7 |
3 |
0 |
|
 |
6 |
 |
1.54 |
1.54 |
114.3 |
-2.60 |
-0.64 |
30.4 |
81 |
11 |
14 |
4 |
2 |
3 |
1 |
0 |
|
 |
7 |
 |
1.76 |
2.97 |
122.3 |
-2.76 |
-0.60 |
31.3 |
82 |
18 |
11 |
7 |
3 |
5 |
0 |
0 |
|
 |
8 |
 |
1.41 |
1.76 |
124.9 |
-2.71 |
-0.61 |
28.4 |
84 |
14 |
9 |
11 |
2 |
4 |
0 |
0 |
|
 |
9 |
 |
1.60 |
2.32 |
128.7 |
-2.14 |
-0.45 |
24.6 |
81 |
17 |
10 |
10 |
5 |
6 |
0 |
1 |
|
 |
10 |
 |
1.77 |
1.76 |
138.8 |
-1.91 |
-0.32 |
23.9 |
76 |
17 |
10 |
7 |
8 |
5 |
3 |
0 |
|
 |
11 |
 |
1.72 |
2.21 |
170.3 |
-2.39 |
-0.50 |
27.9 |
82 |
18 |
16 |
12 |
6 |
6 |
0 |
0 |
|
 |
12 |
 |
1.49 |
1.51 |
178.8 |
-1.37 |
-0.35 |
14.8 |
83 |
15 |
7 |
16 |
13 |
9 |
0 |
1 |
BO2 301 K
|
 |
13 |
 |
1.37 |
1.56 |
180.0 |
-1.58 |
-0.39 |
16.6 |
85 |
12 |
6 |
16 |
9 |
9 |
0 |
0 |
BO2 301 K
|
 |
14 |
 |
1.48 |
1.50 |
183.0 |
-1.69 |
-0.39 |
19.0 |
84 |
17 |
8 |
14 |
10 |
10 |
0 |
0 |
BO2 301 K
|
 |
15 |
 |
1.72 |
1.96 |
187.4 |
-1.72 |
-0.35 |
19.4 |
78 |
19 |
12 |
12 |
9 |
9 |
3 |
0 |
|
 |
16 |
 |
1.53 |
1.54 |
192.7 |
-1.66 |
-0.40 |
18.1 |
83 |
17 |
8 |
15 |
9 |
10 |
0 |
0 |
BO2 301 K
|
 |
17 |
 |
1.50 |
1.52 |
197.5 |
-1.67 |
-0.41 |
16.6 |
81 |
17 |
8 |
13 |
8 |
11 |
0 |
0 |
BO2 301 K
|
 |
18 |
 |
1.43 |
1.44 |
200.0 |
-1.81 |
-0.44 |
19.6 |
82 |
16 |
10 |
15 |
10 |
8 |
0 |
0 |
BO2 301 K
|
 |
19 |
 |
1.49 |
1.50 |
207.4 |
-1.17 |
-0.28 |
12.9 |
80 |
13 |
8 |
16 |
14 |
10 |
3 |
0 |
BO2 301 K
|
 |
20 |
 |
1.64 |
2.56 |
211.8 |
-1.58 |
-0.28 |
17.0 |
79 |
20 |
7 |
15 |
11 |
9 |
3 |
1 |
|
 |
21 |
 |
1.79 |
1.75 |
216.0 |
-1.93 |
-0.33 |
21.0 |
80 |
22 |
8 |
14 |
8 |
10 |
3 |
0 |
|
 |
22 |
 |
1.76 |
1.94 |
217.3 |
-2.58 |
-0.57 |
26.8 |
84 |
25 |
11 |
15 |
3 |
7 |
0 |
0 |
|
 |
23 |
 |
1.79 |
1.74 |
220.0 |
-1.94 |
-0.35 |
19.1 |
78 |
22 |
8 |
11 |
7 |
9 |
3 |
0 |
|
 |
24 |
 |
1.45 |
1.46 |
222.9 |
-1.62 |
-0.38 |
18.7 |
84 |
15 |
13 |
18 |
13 |
10 |
0 |
0 |
BO2 301 K
|
 |
25 |
 |
1.78 |
1.99 |
224.6 |
-2.73 |
-0.61 |
28.1 |
83 |
23 |
13 |
14 |
4 |
5 |
0 |
0 |
|
 |
26 |
 |
1.81 |
2.08 |
222.1 |
-2.62 |
-0.58 |
25.6 |
81 |
25 |
11 |
12 |
2 |
8 |
0 |
0 |
|
 |
27 |
 |
1.63 |
1.64 |
232.0 |
-2.00 |
-0.42 |
20.5 |
80 |
21 |
11 |
15 |
8 |
7 |
3 |
0 |
|
 |
28 |
 |
1.40 |
1.39 |
232.8 |
-1.79 |
-0.47 |
18.4 |
83 |
16 |
12 |
18 |
9 |
10 |
0 |
0 |
BO2 301 K
|
 |
29 |
 |
1.27 |
1.41 |
231.3 |
-1.38 |
-0.25 |
15.6 |
78 |
20 |
7 |
14 |
14 |
8 |
4 |
0 |
|
 |
30 |
 |
1.43 |
1.45 |
239.9 |
-1.19 |
-0.26 |
13.3 |
80 |
16 |
9 |
18 |
16 |
13 |
3 |
0 |
BO2 301 K
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |