PDBsum entry 4qbd Go to PDB code:  Pore analysis for: 4qbd calculated with MOLE 2.0 PDB id 4qbd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   18 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.66 1.93 25.3 -1.13 -0.21 25.1 74 4 3 0 4 2 0 1   2 1.29 2.24 41.4 -2.44 -0.53 26.5 77 6 6 3 2 2 2 0   3 1.53 1.90 45.3 -1.83 -0.56 20.7 76 3 6 3 2 1 2 0   4 2.74 2.75 50.2 -2.56 -0.65 29.8 85 8 7 6 4 0 1 0   5 1.53 1.91 51.9 -1.61 -0.50 21.3 79 3 7 3 3 2 1 0   6 1.70 1.86 53.2 -1.55 -0.48 17.9 76 4 5 4 3 1 1 0   7 1.53 1.89 56.4 -1.56 -0.31 21.3 74 6 5 3 4 3 1 0   8 1.80 1.82 56.6 -1.38 -0.46 24.3 84 6 3 3 5 0 1 0   9 1.93 2.43 60.8 -1.57 -0.37 18.8 73 7 4 4 3 2 1 0   10 1.70 1.86 71.1 -1.22 -0.31 18.8 75 7 6 4 5 3 0 0   11 2.77 4.49 81.6 -2.17 -0.51 28.3 80 8 11 7 7 1 1 0   12 1.64 1.64 152.0 -1.57 -0.40 21.0 85 14 11 11 10 2 2 0   13 1.48 1.49 161.9 -1.78 -0.44 22.2 87 14 10 10 10 2 1 0   14 1.76 1.75 172.9 -1.80 -0.43 23.9 83 16 14 9 11 3 1 0   15 1.53 2.02 170.3 -2.08 -0.46 28.2 82 15 11 5 9 2 0 1   16 1.19 1.51 254.7 -1.89 -0.37 25.9 82 14 11 9 6 2 2 0   17 1.28 1.43 275.7 -2.17 -0.39 29.8 81 17 14 7 7 3 1 0   18 1.23 2.15 375.8 -1.92 -0.38 27.3 83 24 14 9 12 3 1 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.