 |
PDBsum entry 4q9j
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4q9j calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4q9j
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
8 pores,
coloured by radius |
|
8 pores,
coloured by radius
|
8 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.29 |
1.82 |
27.5 |
0.74 |
0.20 |
12.4 |
79 |
|
3 |
3 |
1 |
11 |
0 |
0 |
0 |
|
|
 |
|
2 |
 |
1.78 |
3.10 |
27.8 |
3.94 |
1.25 |
0.2 |
85 |
0 |
0 |
0 |
8 |
1 |
1 |
0 |
|
|
3 |
 |
1.25 |
2.83 |
34.8 |
0.63 |
0.27 |
1.9 |
66 |
0 |
0 |
2 |
4 |
7 |
0 |
0 |
30F 1 C 30F 3 C 30F 3 D
|
|
4 |
 |
1.72 |
1.83 |
47.0 |
-0.39 |
-0.13 |
7.3 |
83 |
2 |
0 |
6 |
8 |
4 |
0 |
0 |
30F 1 D
|
|
5 |
 |
1.25 |
1.53 |
62.2 |
0.93 |
0.22 |
2.1 |
73 |
0 |
1 |
6 |
6 |
12 |
0 |
0 |
30F 1 C 30F 3 C 30F 1 D 30F 3 D 30F 5 D
|
|
6 |
 |
1.17 |
1.33 |
69.3 |
0.64 |
0.13 |
2.3 |
75 |
1 |
0 |
6 |
11 |
12 |
0 |
0 |
30F 1 C 30F 3 C 30F 1 D 30F 3 D
|
|
7 |
 |
1.20 |
1.43 |
115.9 |
-1.40 |
-0.41 |
17.3 |
81 |
9 |
6 |
12 |
11 |
5 |
0 |
1 |
30F 1 D
|
 |
8 |
 |
1.49 |
1.51 |
115.6 |
-1.55 |
-0.40 |
22.7 |
85 |
9 |
7 |
7 |
7 |
1 |
0 |
1 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program