PDBsum entry 4q9h

Pore analysis for: 4q9h calculated with

MOLE 2.0

PDB id

4q9h

Pores calculated on whole structure

Pores calculated excluding ligands

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19 pores, coloured by radius

19 pores, coloured by radius

19 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.16

1.28

44.2

-0.25

-0.05

6.0

81

2

2

8

7

5

1

0

2

1.22

1.22

49.1

0.10

0.04

6.4

77

2

2

7

8

5

1

0

3

1.15

1.73

53.8

-0.25

-0.17

2.3

77

0

0

8

8

4

0

0

4

1.16

1.28

53.6

1.11

0.43

1.4

81

0

0

5

15

6

1

0

5

1.18

2.80

55.9

1.89

0.79

1.0

71

0

0

2

14

10

0

0

6

1.14

1.74

56.8

0.29

0.09

4.9

75

2

2

8

7

6

0

0

7

1.22

1.23

58.5

1.56

0.57

1.3

78

0

0

4

16

6

1

0

8

1.30

1.49

60.5

1.92

0.62

1.4

78

1

0

3

14

9

0

0

9

1.18

1.28

63.3

1.20

0.51

1.2

77

0

0

5

10

12

1

0

10

1.27

2.55

63.9

0.94

0.38

7.0

80

1

2

5

14

4

1

0

11

1.52

1.72

67.8

1.04

0.45

4.9

75

2

2

6

15

9

0

0

12

1.22

1.22

73.7

1.07

0.43

1.8

74

1

0

5

10

12

0

0

13

1.17

1.28

73.4

-0.23

0.01

6.6

81

1

2

8

10

6

2

0

14

1.23

1.23

78.3

0.08

0.06

6.3

77

1

2

7

11

6

2

0

15

1.29

1.48

81.4

1.06

0.48

3.8

74

3

2

7

8

15

0

0

16

1.17

1.49

81.9

-1.61

-0.32

25.6

81

7

8

3

7

1

1

1

17

1.18

2.75

83.5

1.03

0.56

5.6

73

1

2

5

13

11

1

0

18

1.28

1.50

88.1

1.21

0.47

5.4

78

2

2

6

13

10

0

0

19

1.29

2.27

87.6

0.08

0.15

8.4

75

3

4

9

10

9

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.