spacer
spacer

PDBsum entry 4q2k

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 4q2k calculated with MOLE 2.0 PDB id
4q2k
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
7 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.64 1.62 33.6 -0.26 -0.21 8.1 90 2 0 3 3 2 0 0  5BF 301 D
2 2.19 2.23 38.4 -0.21 0.02 8.7 88 3 0 6 4 3 0 0  5BF 301 D
3 1.76 2.85 47.7 -1.11 0.03 9.0 78 4 0 4 5 5 0 0  5BF 301 A 5BF 301 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer