PDBsum entry 4q2d Go to PDB code:  Tunnel analysis for: 4q2d calculated with MOLE 2.0 PDB id 4q2d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 2.02 52.4 0.00 -0.03 14.2 80 2 2 1 13 2 1 0   2 1.15 2.02 53.2 0.38 0.15 11.9 79 3 2 1 14 2 0 0  MSE 486 A 3 1.14 2.01 73.7 -0.34 -0.14 14.8 83 2 5 3 15 2 0 0  MSE 360 A 4 1.15 2.00 78.5 -0.34 -0.16 13.9 83 4 4 5 17 1 1 0  MSE 360 A 5 1.11 1.33 19.3 -0.81 -0.01 19.8 64 2 2 0 1 2 1 0   6 1.14 1.14 27.6 0.05 0.06 10.9 73 4 1 2 5 1 1 0   7 1.12 1.13 30.5 -0.26 0.21 12.7 72 5 1 2 4 1 1 0   8 1.21 2.02 16.7 0.79 0.23 11.9 87 1 1 2 5 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.