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PDBsum entry 4py3

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 4py3 calculated with MOLE 2.0 PDB id
4py3
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.32 1.51 55.8 -1.56 -0.36 21.5 81 3 6 3 5 2 2 0  
2 1.17 1.36 62.6 -1.04 -0.23 16.5 83 4 4 5 8 0 3 0  
3 1.69 1.87 79.3 -1.88 -0.47 22.0 83 7 7 7 5 1 3 0  
4 1.56 1.53 93.9 -1.32 -0.11 24.4 81 8 10 3 9 1 2 0  
5 1.71 1.76 97.2 -1.47 -0.37 21.2 81 5 8 7 8 2 1 1  
6 1.48 1.86 101.7 -1.99 -0.43 25.8 84 8 8 4 7 3 1 0  
7 1.54 1.71 111.3 -1.97 -0.50 20.9 85 6 9 11 6 3 3 0  
8 1.24 2.25 112.9 -0.64 -0.09 20.5 82 8 10 4 15 0 2 0  
9 1.50 1.64 114.5 -1.52 -0.40 19.8 85 7 10 9 10 2 4 0  
10 1.69 1.86 118.3 -1.28 -0.34 21.8 81 9 13 8 12 1 4 0  
11 1.46 1.63 121.0 -2.02 -0.53 22.2 83 8 15 11 6 3 4 0  EDO 302 I
12 1.72 1.81 122.1 -1.77 -0.46 19.9 84 7 12 10 10 1 6 0  
13 1.50 1.57 125.3 -1.19 -0.27 20.0 83 11 10 7 10 2 3 0  
14 1.67 1.66 125.0 -1.19 -0.24 20.3 81 11 13 7 14 0 6 0  
15 1.49 1.47 125.9 -1.86 -0.45 22.3 85 9 9 8 6 3 2 0  
16 1.17 2.57 133.3 -1.30 -0.32 18.7 87 7 13 11 13 2 2 0  
17 1.19 1.37 145.4 -1.73 -0.42 20.1 86 7 15 13 13 1 5 0  
18 1.35 1.24 149.5 -2.14 -0.44 29.6 82 12 17 8 12 2 4 0  
19 1.20 1.37 149.4 -1.49 -0.32 20.7 86 9 15 10 13 1 3 0  
20 1.19 2.58 148.8 -1.07 -0.21 19.5 84 11 16 9 17 0 4 0  
21 2.71 3.24 152.9 -1.17 -0.35 20.9 85 9 16 8 18 0 4 0  
22 1.53 1.69 161.1 -1.41 -0.39 18.7 83 10 14 11 14 2 4 0  
23 1.36 1.56 166.7 -1.87 -0.42 24.3 82 13 14 8 12 2 5 0  EDO 302 I
24 1.45 1.38 169.2 -2.00 -0.42 32.0 82 18 30 7 16 1 3 0  
25 1.50 1.56 176.3 -1.69 -0.36 22.4 85 15 8 12 13 2 3 0  
26 1.75 1.89 187.2 -1.66 -0.36 22.2 84 16 11 11 17 0 6 0  
27 1.42 1.28 191.3 -1.98 -0.45 23.9 82 16 16 9 11 3 4 0  EDO 302 I
28 1.52 1.70 203.3 -1.75 -0.43 21.5 83 15 17 12 17 2 7 0  EDO 302 I
29 1.21 2.40 211.0 -1.19 -0.25 18.7 84 15 13 14 22 1 4 1  
30 2.01 2.40 283.5 -1.26 -0.30 20.7 82 23 23 17 28 2 6 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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