PDBsum entry 4pj8 Go to PDB code:  Tunnel analysis for: 4pj8 calculated with MOLE 2.0 PDB id 4pj8 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.45 1.57 33.6 -1.29 -0.08 6.8 74 2 1 4 0 5 4 0   2 1.30 1.65 15.1 0.54 0.21 12.1 82 1 1 0 4 1 1 0   3 1.40 3.01 19.8 1.86 0.60 3.9 87 1 1 2 6 1 1 0   4 1.20 1.20 20.5 1.92 0.61 2.2 87 1 0 2 5 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.