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PDBsum entry 4phd

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Pore analysis for: 4phd calculated with MOLE 2.0 PDB id
4phd
Pores calculated on whole structure Pores calculated excluding ligands

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3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.98 3.00 44.2 -1.15 -0.11 18.9 82 4 2 2 1 1 1 0  0KX 405 A DT 6 P DG 7 P DC 8 P DG 9 P DA 10 P DA
4 T DT 7 T DC 8 T
2 2.15 2.15 52.0 -0.60 -0.39 12.1 82 3 1 1 2 0 1 0  DT 6 P DG 7 P DC 8 P DG 9 P DA 10 P DC 13 T DA 14
T
3 1.96 1.96 68.6 -0.17 -0.48 5.3 81 2 0 1 1 0 1 0  DG 1 P DC 2 P DT 3 P DG 4 P DA 5 P DT 6 P DG 7 P
DC 8 P DG 9 P DA 10 P DA 14 T DG 15 T DC 16 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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