PDBsum entry 4pha

Pore analysis for: 4pha calculated with

MOLE 2.0

PDB id

4pha

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

9 pores, coloured by radius

9 pores, coloured by radius

9 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.54

1.54

25.2

-1.44

-0.64

10.3

87

4

0

2

1

0

0

0

DG 7 P DA 11 T DT 12 T DC 13 T DA 14 T

2

1.25

1.26

26.5

-1.12

-0.63

14.7

90

2

2

3

2

0

1

0

3

2.01

2.01

33.8

-1.10

-0.52

8.5

86

2

0

3

2

1

1

0

DG 4 D DG 5 D DC 5 T DA 6 T DT 7 T DC 8 T DG 9 T

4

1.82

2.94

35.1

-0.92

-0.14

19.0

90

4

2

2

3

0

0

0

DC 3 D DG 4 D DG 5 D DG 7 P DC 8 P DG 9 P DA 10 P
DC 5 T DA 6 T DT 7 T

5

1.82

1.81

35.8

-1.60

-0.48

22.1

90

4

3

3

4

0

1

0

DC 3 D DG 4 D DG 5 D DC 5 T

6

1.37

1.39

36.7

-1.41

-0.26

12.2

78

2

1

3

0

3

1

0

0KX 405 A DA 10 P DA 6 T DT 7 T DC 8 T DG 9 T

7

1.22

1.49

37.7

-1.49

-0.26

20.1

82

4

1

2

1

2

0

0

DC 8 P DG 9 P DA 10 P DA 6 T DT 7 T DC 8 T DG 9 T
DC 10 T DA 11 T DT 12 T

8

1.22

1.48

49.9

-1.61

-0.39

16.3

80

5

1

3

2

2

0

0

DG 7 P DC 8 P DG 9 P DA 10 P DA 6 T DT 7 T DC 8 T
DG 9 T DA 11 T DT 12 T DC 13 T DA 14 T

9

2.10

2.10

65.8

-1.35

-0.17

19.3

80

6

2

2

1

1

1

0

0KX 405 A DG 7 P DC 8 P DG 9 P DA 10 P DC 13 T DA
14 T

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.