 |
PDBsum entry 4pc3
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4pc3 calculated with MOLE 2.0
|
PDB id
|
|
|
|
4pc3
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
30 pores,
coloured by radius |
 |
29 pores,
coloured by radius
|
29 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.67 |
4.16 |
31.1 |
-1.73 |
-0.49 |
23.8 |
87 |
 |
3 |
4 |
3 |
3 |
0 |
1 |
0 |
 |
GDP 401 A
|
 |
 |
2 |
 |
2.37 |
3.99 |
42.6 |
-2.21 |
-0.52 |
26.5 |
86 |
4 |
4 |
3 |
3 |
1 |
0 |
0 |
|
 |
3 |
 |
1.74 |
1.97 |
49.5 |
-1.40 |
-0.44 |
19.4 |
80 |
9 |
2 |
3 |
4 |
2 |
2 |
0 |
GOL 301 D
|
 |
4 |
 |
1.85 |
3.02 |
50.6 |
-1.99 |
-0.51 |
28.5 |
85 |
6 |
6 |
4 |
3 |
1 |
1 |
0 |
GDP 401 A
|
 |
5 |
 |
1.85 |
2.03 |
52.2 |
-1.93 |
-0.50 |
26.2 |
84 |
7 |
5 |
3 |
4 |
1 |
0 |
0 |
GOL 301 D
|
 |
6 |
 |
1.84 |
3.02 |
52.3 |
-2.24 |
-0.51 |
31.4 |
82 |
7 |
4 |
2 |
3 |
1 |
0 |
0 |
|
 |
7 |
 |
1.80 |
1.98 |
53.2 |
-1.78 |
-0.50 |
22.1 |
84 |
10 |
4 |
3 |
5 |
1 |
3 |
0 |
|
 |
8 |
 |
1.81 |
1.99 |
57.3 |
-1.59 |
-0.47 |
22.2 |
83 |
9 |
5 |
4 |
4 |
1 |
4 |
0 |
GDP 401 A
|
 |
9 |
 |
2.74 |
2.89 |
58.2 |
-2.49 |
-0.57 |
30.8 |
82 |
10 |
7 |
3 |
5 |
0 |
2 |
0 |
|
 |
10 |
 |
1.80 |
1.98 |
61.1 |
-1.81 |
-0.50 |
23.6 |
82 |
9 |
4 |
3 |
4 |
1 |
3 |
0 |
|
 |
11 |
 |
1.72 |
1.95 |
64.0 |
-2.39 |
-0.57 |
30.4 |
82 |
12 |
6 |
4 |
5 |
1 |
1 |
0 |
|
 |
12 |
 |
2.55 |
3.81 |
65.2 |
-2.41 |
-0.71 |
25.6 |
89 |
6 |
7 |
5 |
4 |
0 |
0 |
0 |
GOL 402 B
|
 |
13 |
 |
1.73 |
1.89 |
67.9 |
-2.10 |
-0.45 |
25.7 |
80 |
11 |
5 |
2 |
2 |
3 |
3 |
0 |
|
 |
14 |
 |
2.57 |
4.70 |
74.0 |
-1.45 |
-0.35 |
25.7 |
88 |
7 |
6 |
3 |
7 |
0 |
1 |
0 |
GDP 401 B
|
 |
15 |
 |
2.77 |
2.87 |
74.0 |
-2.49 |
-0.58 |
30.1 |
83 |
12 |
9 |
4 |
6 |
0 |
2 |
0 |
|
 |
16 |
 |
1.73 |
1.88 |
74.6 |
-2.11 |
-0.48 |
26.7 |
80 |
14 |
4 |
3 |
2 |
4 |
2 |
0 |
|
 |
17 |
 |
2.39 |
2.97 |
75.2 |
-1.37 |
-0.40 |
23.4 |
88 |
6 |
7 |
4 |
6 |
0 |
1 |
0 |
GDP 401 B
|
 |
18 |
 |
1.78 |
1.92 |
80.4 |
-2.03 |
-0.53 |
23.6 |
82 |
12 |
6 |
4 |
2 |
2 |
3 |
0 |
|
 |
19 |
 |
1.76 |
1.96 |
80.5 |
-1.90 |
-0.46 |
23.1 |
83 |
14 |
4 |
3 |
6 |
3 |
3 |
0 |
|
 |
20 |
 |
1.31 |
1.52 |
81.2 |
-2.44 |
-0.63 |
27.1 |
85 |
9 |
6 |
4 |
1 |
0 |
2 |
0 |
GOL 402 B
|
 |
21 |
 |
1.75 |
1.92 |
83.7 |
-2.11 |
-0.49 |
25.6 |
83 |
13 |
7 |
3 |
3 |
2 |
3 |
0 |
|
 |
22 |
 |
2.37 |
3.99 |
88.5 |
-2.57 |
-0.63 |
31.8 |
82 |
10 |
11 |
5 |
4 |
0 |
2 |
0 |
|
 |
23 |
 |
1.57 |
1.77 |
96.6 |
-1.70 |
-0.46 |
26.3 |
83 |
11 |
7 |
2 |
7 |
0 |
2 |
0 |
GDP 401 B
|
 |
24 |
 |
2.44 |
2.97 |
104.1 |
-1.66 |
-0.49 |
23.8 |
88 |
9 |
9 |
6 |
7 |
0 |
1 |
0 |
GDP 401 B GOL 402 B
|
 |
25 |
 |
1.27 |
1.43 |
113.4 |
-2.50 |
-0.58 |
30.8 |
81 |
16 |
11 |
6 |
3 |
1 |
3 |
0 |
|
 |
26 |
 |
2.46 |
2.99 |
113.9 |
-1.83 |
-0.46 |
24.7 |
88 |
12 |
8 |
7 |
7 |
0 |
1 |
0 |
GDP 401 B
|
 |
27 |
 |
1.69 |
1.89 |
119.0 |
-2.22 |
-0.52 |
24.3 |
83 |
18 |
7 |
7 |
3 |
3 |
3 |
0 |
|
 |
28 |
 |
1.23 |
1.36 |
123.4 |
-2.51 |
-0.59 |
29.9 |
82 |
16 |
14 |
6 |
4 |
0 |
4 |
0 |
|
 |
29 |
 |
1.92 |
2.14 |
29.9 |
-1.45 |
-0.30 |
26.4 |
92 |
4 |
2 |
1 |
6 |
0 |
0 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |