PDBsum entry 4pby

Tunnel analysis for: 4pby calculated with

MOLE 2.0

PDB id

4pby

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

7 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.27

1.46

23.7

-0.54

-0.51

12.1

83

2

4

2

2

1

0

0

2

1.27

1.45

42.7

-0.84

-0.32

18.9

80

4

7

2

4

3

0

0

3

1.11

1.38

20.5

-1.41

-0.62

6.4

75

1

1

5

2

1

4

1

4

1.32

1.46

23.8

0.44

0.05

4.3

71

1

0

4

2

2

4

0

5

1.19

1.19

33.6

-1.75

-0.47

14.3

74

2

1

6

1

3

4

1

6

1.39

1.74

15.6

-0.65

-0.09

6.3

73

1

0

4

4

2

1

0

7

1.33

2.38

28.1

-1.48

-0.23

18.1

76

2

2

6

3

3

0

1

IPA 501 A

8

1.33

1.66

18.8

-2.33

-0.25

33.9

79

4

2

0

2

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.