PDBsum entry 4pbw

Pore analysis for: 4pbw calculated with

MOLE 2.0

PDB id

4pbw

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

9 pores, coloured by radius

8 pores, coloured by radius

8 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.36

1.65

39.0

-1.39

-0.50

14.5

88

2

3

6

4

0

0

0

2

2.00

2.19

48.1

-2.08

-0.54

17.3

86

5

3

6

3

0

2

0

3

1.48

1.67

48.6

-2.06

-0.46

18.4

84

5

4

7

4

1

3

0

4

1.63

2.73

51.3

-1.66

-0.45

18.1

85

5

4

7

4

1

2

0

5

1.66

2.26

53.3

-2.11

-0.60

16.4

88

7

2

8

2

0

1

0

6

1.78

1.73

66.9

-1.65

-0.51

18.1

82

7

5

5

4

1

2

0

NAG 401 B

7

1.64

2.38

72.3

-1.92

-0.39

20.4

79

6

5

6

6

1

3

0

8

1.71

1.87

107.3

-1.44

-0.41

15.6

83

6

6

8

9

1

4

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.