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PDBsum entry 4p4k

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Top Page protein ligands metals Protein-protein interface(s) links
Immune system PDB id
4p4k
Contents
Protein chains
178 a.a.
199 a.a.
204 a.a.
241 a.a.
Ligands
NAG ×5
Metals
0BE ×2
_NA ×2
Waters ×330

References listed in PDB file
Key reference
Title Structural basis of chronic beryllium disease: linking allergic hypersensitivity and autoimmunity.
Authors G.M.Clayton, Y.Wang, F.Crawford, A.Novikov, B.T.Wimberly, J.S.Kieft, M.T.Falta, N.A.Bowerman, P.Marrack, A.P.Fontenot, S.Dai, J.W.Kappler.
Ref. Cell, 2014, 158, 132-142. [DOI no: 10.1016/j.cell.2014.04.048]
PubMed id 24995984
Abstract
T-cell-mediated hypersensitivity to metal cations is common in humans. How the T cell antigen receptor (TCR) recognizes these cations bound to a major histocompatibility complex (MHC) protein and self-peptide is unknown. Individuals carrying the MHCII allele, HLA-DP2, are at risk for chronic beryllium disease (CBD), a debilitating inflammatory lung condition caused by the reaction of CD4 T cells to inhaled beryllium. Here, we show that the T cell ligand is created when a Be(2+) cation becomes buried in an HLA-DP2/peptide complex, where it is coordinated by both MHC and peptide acidic amino acids. Surprisingly, the TCR does not interact with the Be(2+) itself, but rather with surface changes induced by the firmly bound Be(2+) and an accompanying Na(+) cation. Thus, CBD, by creating a new antigen by indirectly modifying the structure of preexisting self MHC-peptide complex, lies on the border between allergic hypersensitivity and autoimmunity.
PROCHECK
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