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PDBsum entry 4p2q

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Pore analysis for: 4p2q calculated with MOLE 2.0 PDB id
4p2q
Pores calculated on whole structure Pores calculated excluding ligands

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29 pores, coloured by radius 34 pores, coloured by radius 34 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.28 1.73 28.9 0.20 0.45 1.7 74 0 0 3 2 4 2 0  
2 1.54 3.85 49.9 -2.82 -0.51 32.1 83 8 8 1 2 2 0 0  
3 1.53 3.79 52.5 -2.71 -0.44 32.5 82 12 7 1 3 2 0 0  
4 1.37 1.72 82.6 -0.78 -0.22 13.1 78 6 7 4 6 4 2 0  
5 1.34 2.08 84.8 -0.99 -0.33 14.1 83 6 7 6 6 2 2 0  
6 2.12 2.32 93.5 -2.09 -0.55 17.8 90 5 3 13 3 0 1 1  
7 1.31 1.41 98.2 -1.73 -0.43 12.2 88 6 7 14 8 2 0 0  
8 1.32 3.08 107.3 -2.85 -0.72 31.0 82 13 11 7 1 0 1 0  
9 1.37 1.48 135.0 -1.50 -0.34 16.6 86 8 7 13 10 2 1 1  
10 1.32 1.48 136.0 -1.61 -0.38 19.7 83 12 11 11 10 2 2 1  
11 1.29 3.03 145.7 -1.96 -0.54 20.2 85 12 8 14 6 0 3 2  
12 1.37 2.08 159.5 -1.47 -0.46 18.9 84 10 11 11 6 2 2 0  
13 1.40 1.49 188.1 -0.86 -0.28 12.9 84 9 11 15 15 4 3 1  
14 1.48 3.61 197.9 -1.17 -0.41 14.1 85 10 9 18 11 2 4 2  
15 1.51 1.69 48.2 -1.00 -0.31 11.1 87 2 3 5 7 1 0 0  
16 2.67 3.50 51.3 -1.29 -0.42 15.1 85 4 4 8 4 0 1 1  
17 1.94 2.25 57.4 -1.99 -0.68 11.4 89 4 3 11 3 0 1 1  
18 2.42 3.50 59.5 -1.65 -0.47 15.4 84 6 4 9 4 1 1 1  
19 1.22 1.50 64.7 -2.03 -0.61 22.9 96 7 2 8 2 0 0 0  
20 1.95 2.24 64.7 -2.35 -0.62 15.7 90 5 5 12 3 0 0 0  
21 1.40 2.91 65.5 -2.65 -0.45 30.4 82 11 11 2 1 2 0 0  
22 1.82 1.91 66.5 -1.61 -0.54 26.2 84 5 13 3 6 0 2 0  
23 3.46 3.90 66.9 -2.01 -0.43 19.6 85 7 6 10 4 1 0 0  
24 1.18 1.65 66.9 -0.72 -0.23 13.7 71 4 5 1 5 4 2 0  
25 2.01 2.93 70.7 -2.00 -0.60 27.0 84 5 9 5 4 0 2 0  
26 2.08 2.98 75.5 -2.45 -0.66 29.4 83 6 12 5 4 0 2 0  
27 1.21 1.81 93.9 -0.26 -0.10 11.0 76 3 5 3 6 6 1 0  
28 1.33 1.55 103.7 -1.62 -0.41 20.6 81 11 7 9 7 1 1 1  
29 1.18 1.58 126.2 -1.80 -0.44 26.7 83 9 15 6 6 3 2 0  
30 1.18 1.58 130.5 -1.43 -0.37 24.0 81 10 9 4 6 3 0 0  
31 1.31 1.44 130.9 -1.88 -0.51 19.6 83 12 9 12 8 0 2 1  
32 1.20 1.66 170.9 -1.12 -0.37 14.3 81 9 10 13 12 3 3 1  
33 1.24 1.17 245.6 -1.97 -0.44 24.4 81 26 22 14 12 5 3 2  
34 1.14 1.43 43.7 -0.79 -0.14 9.9 71 1 2 1 3 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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