PDBsum entry 4ora

Tunnel analysis for: 4ora calculated with

MOLE 2.0

PDB id

4ora

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

8 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.35

1.90

18.4

-0.91

-0.32

8.9

73

2

1

2

3

2

1

0

2

1.33

1.92

28.3

-1.62

-0.39

16.9

72

4

1

3

2

3

2

1

3

1.51

1.74

21.7

-0.40

0.17

12.2

85

2

1

1

3

1

0

0

4

1.62

1.82

24.5

-1.48

-0.16

23.4

71

4

2

1

1

3

1

0

5

1.24

2.82

28.4

-1.48

-0.19

23.0

73

5

2

1

3

2

1

0

6

1.17

1.45

21.6

1.55

0.50

6.4

73

2

1

0

6

3

0

0

7

1.16

1.45

23.1

1.68

0.59

5.0

73

2

1

0

8

3

0

0

8

1.20

1.20

15.8

0.27

0.11

3.3

66

1

1

0

3

1

1

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.