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PDBsum entry 4ond

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 4ond calculated with MOLE 2.0 PDB id
4ond
Pores calculated on whole structure Pores calculated excluding ligands

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4 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.36 2.46 30.3 -1.59 -0.42 15.4 79 4 0 3 1 2 1 0  DA 10 K DG 11 K DA 14 K DT 10 L DC 11 L
2 1.61 2.02 37.2 -0.35 -0.19 14.9 85 3 1 2 3 0 0 0  DA 14 K DT 10 L
3 1.35 1.36 37.9 -1.66 -0.41 20.1 89 5 2 2 2 0 0 0  DT 10 J DC 11 J
4 1.34 1.36 71.2 -1.19 -0.41 19.2 87 5 6 4 3 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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