spacer
spacer

PDBsum entry 4oln

Go to PDB code: 
Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 4oln calculated with MOLE 2.0 PDB id
4oln
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.52 1.84 16.0 -0.39 -0.32 3.6 62 1 0 2 0 0 2 4  
2 1.53 2.73 21.0 -0.73 -0.33 7.4 64 2 0 2 0 0 2 4  DA 10 E DG 11 E
3 1.52 1.84 21.9 -0.04 -0.12 5.8 67 2 0 2 1 1 2 4  
4 1.52 2.74 34.1 -0.92 -0.59 6.8 64 1 0 3 0 0 2 4  DG 11 E DT 12 E DG 13 E DA 14 E DT 10 F DC 11 F
DT 12 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer