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PDBsum entry 4oks

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4oks calculated with MOLE 2.0 PDB id
4oks
Pores calculated on whole structure Pores calculated excluding ligands

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12 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.51 2.53 40.8 0.18 -0.22 7.3 94 3 1 2 4 0 2 0  
2 2.10 2.20 43.8 -0.80 -0.28 22.5 82 3 5 0 6 0 0 0  
3 3.86 3.95 44.6 -2.00 -0.60 22.2 84 3 5 4 3 2 1 0  
4 3.13 3.31 45.6 -2.32 -0.70 23.4 89 4 5 4 3 0 1 0  
5 3.80 3.81 46.4 -1.59 -0.47 25.8 82 4 6 2 5 0 0 0  
6 1.90 2.15 59.0 -1.17 -0.58 19.4 83 3 7 1 4 3 1 0  
7 1.92 2.16 68.0 -1.48 -0.63 21.6 83 4 9 3 5 3 1 0  
8 1.66 1.67 76.9 -0.38 -0.27 13.8 82 4 6 2 8 1 7 0  
9 1.92 2.16 77.3 -1.31 -0.54 18.5 83 5 8 4 5 3 2 1  
10 1.20 1.42 119.6 0.08 -0.16 9.9 83 4 7 3 15 6 2 0  
11 1.24 1.43 125.3 -0.34 -0.20 12.4 83 5 8 6 15 6 3 1  
12 1.21 1.44 127.2 0.46 0.09 9.2 88 6 1 5 13 3 5 0  
13 1.24 1.45 132.2 -0.38 -0.23 12.4 82 4 7 6 11 6 3 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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