PDBsum entry 4ok5

Pore analysis for: 4ok5 calculated with

MOLE 2.0

PDB id

4ok5

Pores calculated on whole structure

Pores calculated excluding ligands

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9 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.97

4.13

25.7

-1.51

-0.47

16.4

88

1

3

3

3

1

0

0

2T2 1003 A

2

1.28

1.52

25.8

-1.22

-0.50

16.6

82

2

4

1

3

2

1

0

3

1.96

2.03

26.0

-0.97

-0.49

15.5

79

1

4

1

2

2

0

0

4

2.81

3.78

30.4

-1.41

-0.36

16.2

88

3

3

4

2

2

1

0

5

2.18

2.72

64.9

-0.64

-0.43

14.5

85

2

9

2

7

1

1

1

6

2.31

3.15

71.2

0.03

-0.19

8.6

91

4

3

4

8

1

2

0

7

2.36

3.18

75.3

0.17

-0.24

5.7

91

6

1

2

7

2

2

0

8

2.39

2.50

77.1

-0.48

-0.22

12.0

84

3

9

4

10

3

1

1

2T2 1003 A

9

2.31

3.14

79.5

-0.20

-0.27

8.5

92

3

3

6

8

1

2

0

10

2.16

3.23

83.7

-0.10

-0.19

9.1

92

5

5

9

9

1

4

0

11

2.30

3.16

88.8

0.05

-0.14

8.0

88

7

2

5

7

3

4

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.