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PDBsum entry 4ogx

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protein ligands Protein-protein interface(s) links
Hydrolase/antibody PDB id
4ogx

 

 

 

 

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Contents
Protein chains
236 a.a.
216 a.a.
212 a.a.
Ligands
SO4 ×6
Waters ×270
PDB id:
4ogx
Name: Hydrolase/antibody
Title: Crystal structure of fab dx-2930 in complex with human plasma kallikrein at 2.4 angstrom resolution
Structure: Plasma kallikrein. Chain: a. Fragment: unp residues 391-631. Synonym: fletcher factor, kininogenin, plasma prekallikrein, plasma kallikrein heavy chain, plasma kallikrein light chain. Engineered: yes. Mutation: yes. Dx-2930 heavy chain. Chain: h.
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: klk3, klkb1, klkb1_human. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108. Expression_system_cell_line: sf9. Expressed in: escherichia coli. Expression_system_taxid: 562.
Resolution:
2.40Å     R-factor:   0.188     R-free:   0.236
Authors: T.E.Edwards,M.C.Clifton,J.Abendroth,A.Nixon,R.Ladner
Key ref: J.A.Kenniston et al. (2014). Inhibition of plasma kallikrein by a highly specific active site blocking antibody. J Biol Chem, 289, 23596-23608. PubMed id: 24970892 DOI: 10.1074/jbc.M114.569061
Date:
16-Jan-14     Release date:   09-Jul-14    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P03952  (KLKB1_HUMAN) -  Plasma kallikrein from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
638 a.a.
236 a.a.*
Protein chain
Pfam   ArchSchema ?
S6C4R2  (S6C4R2_HUMAN) -  IgG H chain from Homo sapiens
Seq:
Struc:
275 a.a.
216 a.a.*
Protein chain
Pfam   ArchSchema ?
Q7Z3Y4  (Q7Z3Y4_HUMAN) -  Ig-like domain-containing protein from Homo sapiens
Seq:
Struc:
236 a.a.
212 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 44 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: Chain A: E.C.3.4.21.34  - plasma kallikrein.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: Cleaves selectively Arg-|-Xaa and Lys-|-Xaa bonds, including Lys-|-Arg and Arg-|-Ser bonds in (human) kininogen to release bradykinin.

 

 
DOI no: 10.1074/jbc.M114.569061 J Biol Chem 289:23596-23608 (2014)
PubMed id: 24970892  
 
 
Inhibition of plasma kallikrein by a highly specific active site blocking antibody.
J.A.Kenniston, R.R.Faucette, D.Martik, S.R.Comeau, A.P.Lindberg, K.J.Kopacz, G.P.Conley, J.Chen, M.Viswanathan, N.Kastrapeli, J.Cosic, S.Mason, M.DiLeo, J.Abendroth, P.Kuzmic, R.C.Ladner, T.E.Edwards, C.TenHoor, B.A.Adelman, A.E.Nixon, D.J.Sexton.
 
  ABSTRACT  
 
Plasma kallikrein (pKal) proteolytically cleaves high molecular weight kininogen to generate the potent vasodilator and the pro-inflammatory peptide, bradykinin. pKal activity is tightly regulated in healthy individuals by the serpin C1-inhibitor, but individuals with hereditary angioedema (HAE) are deficient in C1-inhibitor and consequently exhibit excessive bradykinin generation that in turn causes debilitating and potentially fatal swelling attacks. To develop a potential therapeutic agent for HAE and other pKal-mediated disorders, we used phage display to discover a fully human IgG1 monoclonal antibody (DX-2930) against pKal. In vitro experiments demonstrated that DX-2930 potently inhibits active pKal (Ki = 0.120 ± 0.005 nm) but does not target either the zymogen (prekallikrein) or any other serine protease tested. These findings are supported by a 2.1-Å resolution crystal structure of pKal complexed to a DX-2930 Fab construct, which establishes that the pKal active site is fully occluded by the antibody. DX-2930 injected subcutaneously into cynomolgus monkeys exhibited a long half-life (t½ ∼12.5 days) and blocked high molecular weight kininogen proteolysis in activated plasma in a dose- and time-dependent manner. Furthermore, subcutaneous DX-2930 reduced carrageenan-induced paw edema in rats. A potent and long acting inhibitor of pKal activity could be an effective treatment option for pKal-mediated diseases, such as HAE.
 

 

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