 |
PDBsum entry 4ofi
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4ofi calculated with MOLE 2.0
|
PDB id
|
|
|
|
4ofi
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
10 pores,
coloured by radius |
 |
11 pores,
coloured by radius
|
11 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.58 |
1.95 |
30.9 |
-1.99 |
-0.57 |
29.0 |
83 |
 |
3 |
6 |
1 |
2 |
0 |
0 |
0 |
 |
|
 |
 |
2 |
 |
2.98 |
3.20 |
34.5 |
-2.72 |
-0.74 |
29.6 |
82 |
5 |
5 |
4 |
1 |
1 |
1 |
0 |
|
 |
3 |
 |
2.97 |
3.24 |
35.3 |
-2.64 |
-0.66 |
29.0 |
76 |
4 |
5 |
3 |
0 |
2 |
1 |
0 |
|
 |
4 |
 |
2.73 |
2.73 |
36.4 |
-2.15 |
-0.78 |
20.9 |
78 |
4 |
5 |
2 |
1 |
1 |
2 |
0 |
|
 |
5 |
 |
2.73 |
2.73 |
40.0 |
-2.47 |
-0.69 |
26.8 |
80 |
6 |
5 |
4 |
1 |
1 |
1 |
0 |
|
 |
6 |
 |
2.74 |
2.74 |
44.2 |
-2.78 |
-0.72 |
31.6 |
84 |
7 |
6 |
4 |
2 |
0 |
1 |
0 |
|
 |
7 |
 |
1.58 |
1.95 |
44.3 |
-1.99 |
-0.45 |
28.6 |
84 |
5 |
6 |
2 |
2 |
1 |
0 |
0 |
|
 |
8 |
 |
3.29 |
5.07 |
45.4 |
-2.69 |
-0.60 |
33.9 |
84 |
7 |
6 |
4 |
1 |
1 |
0 |
0 |
|
 |
9 |
 |
1.59 |
1.95 |
58.8 |
-1.62 |
-0.25 |
29.5 |
77 |
8 |
8 |
2 |
2 |
4 |
0 |
0 |
|
 |
10 |
 |
1.88 |
3.19 |
70.4 |
-1.58 |
-0.18 |
29.7 |
76 |
8 |
8 |
2 |
1 |
5 |
0 |
0 |
|
 |
11 |
 |
1.55 |
4.77 |
28.8 |
-2.39 |
-0.41 |
31.3 |
78 |
4 |
5 |
1 |
1 |
2 |
0 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |