PDBsum entry 4nwd Go to PDB code:  Tunnel analysis for: 4nwd calculated with MOLE 2.0 PDB id 4nwd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 1.47 32.5 0.00 0.06 9.5 81 0 4 3 7 3 1 0  2QD 301 A 2 1.15 1.51 38.2 -0.28 -0.09 10.1 79 3 2 2 6 1 0 0  2QD 301 A 3 1.46 1.68 15.9 -1.03 -0.23 18.8 86 2 0 0 2 1 1 0   4 1.40 1.67 23.4 -1.02 -0.30 12.5 81 4 1 1 2 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.