PDBsum entry 4nka Go to PDB code:  Tunnel analysis for: 4nka calculated with MOLE 2.0 PDB id 4nka Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   19 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.47 1.47 24.3 -0.74 -0.25 12.6 85 1 1 2 4 2 1 0   2 1.46 1.46 25.6 -0.92 -0.29 12.9 85 1 2 2 4 2 1 0   3 1.47 1.47 26.0 -1.00 -0.15 21.2 85 2 4 2 3 2 0 0   4 1.46 1.46 27.4 -1.25 -0.26 21.1 84 2 5 2 2 2 0 0   5 1.42 1.42 27.6 -0.98 -0.33 13.7 86 2 2 2 5 2 1 0   6 1.40 1.40 29.4 -1.06 -0.17 20.0 86 2 5 2 4 2 0 0   7 1.46 1.47 31.4 -0.43 0.14 10.9 83 3 1 2 3 3 0 0   8 1.45 1.45 32.7 -0.81 -0.06 12.7 82 3 2 2 2 3 0 0   9 1.40 1.40 34.7 -0.69 0.04 12.4 84 3 2 2 4 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.