spacer
spacer

PDBsum entry 4nbq
Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 4nbq calculated with MOLE 2.0 PDB id
4nbq
Pores calculated on whole structure Pores calculated excluding ligands
View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.04 2.28 39.7 -2.97 -0.79 29.6 85 3 3 2 1 0 0 0  
2 3.49 4.69 49.6 -2.62 -0.66 28.7 84 3 8 4 1 1 0 0  
3 2.53 2.53 55.4 -1.70 -0.56 22.7 84 4 5 2 2 0 1 0  
4 1.24 1.28 60.0 0.36 0.07 12.8 79 4 4 0 11 2 1 0  MSE 494 A MSE 510 A MSE 522 A
5 3.12 3.23 68.7 -0.98 0.10 22.8 76 9 3 3 1 5 1 0  MSE 396 C
6 3.07 3.23 68.8 -1.93 -0.49 19.0 79 4 6 4 0 3 2 0  MSE 396 C
7 2.54 2.53 73.2 -1.20 -0.20 20.5 82 5 5 4 2 2 2 0  SO4 706 A MSE 396 C
8 1.26 1.24 80.8 -0.31 -0.05 18.9 79 7 5 2 9 2 0 0  MSE 494 A MSE 510 A MSE 522 A SO4 706 A
9 2.79 3.79 82.5 -1.65 -0.01 24.2 75 12 4 3 1 9 0 0  
10 1.46 1.45 95.8 -0.89 0.03 19.1 77 9 6 3 5 9 0 0  MSE 494 B
11 3.01 3.84 102.7 -1.91 -0.22 23.3 78 9 5 6 0 7 1 0  MSE 396 C
12 1.19 1.17 103.4 -0.91 0.03 18.6 77 9 4 4 9 8 1 0  MSE 494 A MSE 510 A MSE 522 A MSE 396 C
13 2.54 2.52 104.0 -1.68 -0.12 22.5 78 9 5 5 1 7 2 0  SO4 706 A MSE 396 C
14 3.13 3.46 105.0 -1.65 -0.20 27.8 78 14 4 4 1 6 0 0  
15 1.51 1.49 104.8 -2.16 -0.52 26.6 83 7 14 6 3 2 1 0  
16 1.70 1.88 106.8 -1.16 -0.15 20.9 74 12 4 3 1 7 3 0  MSE 396 C
17 1.34 1.30 109.4 -1.29 -0.05 23.8 78 13 6 3 9 6 3 0  MSE 34 B
18 1.21 1.21 109.1 -0.31 -0.06 15.2 76 8 4 3 9 5 3 0  MSE 494 A MSE 510 A MSE 522 A MSE 396 C
19 1.70 1.95 108.4 -1.63 -0.46 21.0 77 8 5 5 0 4 3 0  MSE 396 C
20 1.69 1.88 109.0 -1.77 -0.52 18.4 76 7 7 4 0 5 4 0  MSE 396 C
21 1.71 1.96 109.7 -1.35 -0.34 20.4 77 8 5 4 1 4 4 0  SO4 706 A MSE 396 C
22 1.36 1.38 112.0 -0.22 0.20 19.6 78 13 4 2 10 7 0 0  MSE 494 A MSE 510 A MSE 522 A
23 2.52 2.50 112.6 -1.19 0.02 26.1 79 13 5 3 2 6 1 0  SO4 706 A
24 1.74 1.69 112.5 -2.13 -0.28 25.9 79 8 11 6 3 6 2 0  MSE 396 C
25 3.35 3.38 113.5 -1.90 -0.45 21.8 81 9 8 6 0 4 2 0  SO4 706 A MSE 396 C
26 1.44 1.44 120.0 -0.47 -0.08 16.3 76 9 6 3 5 7 3 0  MSE 494 B MSE 396 C
27 1.46 1.45 127.2 -0.41 0.04 18.9 81 9 8 3 7 6 1 0  SO4 706 A MSE 494 B
28 1.30 1.39 129.1 -1.05 -0.30 19.9 80 12 7 6 5 6 0 0  MSE 469 B MSE 494 B
29 1.26 1.39 136.6 -0.55 0.03 16.1 78 12 6 3 16 7 3 0  MSE 494 A MSE 510 A MSE 522 A MSE 34 B MSE 396 C
30 1.24 1.26 201.3 -1.43 -0.35 19.8 80 12 8 10 12 4 5 0  MSE 34 B MSE 396 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer