spacer
spacer

PDBsum entry 4n8v

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 4n8v calculated with MOLE 2.0 PDB id
4n8v
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.31 2.19 42.2 -1.77 -0.45 16.9 72 3 4 2 2 4 1 0  
2 1.21 1.21 198.7 -1.73 -0.41 20.6 79 12 10 9 5 8 1 0  
3 1.31 1.44 203.6 -1.59 -0.38 21.3 78 9 9 8 7 7 0 0  
4 1.35 1.52 204.1 -1.90 -0.39 24.8 81 10 12 7 7 5 1 0  
5 1.36 2.51 26.3 -1.38 -0.56 11.7 77 4 1 4 1 2 0 0  
6 1.93 2.47 25.8 -0.84 -0.08 22.2 69 4 3 0 3 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer