PDBsum entry 4n3c

Tunnel analysis for: 4n3c calculated with

MOLE 2.0

PDB id

4n3c

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.45

1.53

43.3

-0.67

-0.33

9.1

77

4

2

3

3

3

4

1

UD1 1201 A

2

1.44

1.44

48.1

-0.58

-0.22

10.2

77

4

1

2

4

4

1

1

UD1 1201 A

3

1.43

1.43

59.0

-0.96

-0.38

13.2

82

4

2

4

4

3

4

0

UD1 1201 A

4

1.29

1.29

17.3

-1.80

-0.19

20.0

78

2

1

1

1

1

0

0

5

1.44

1.61

18.8

-1.78

-0.17

20.1

77

2

1

1

2

1

0

0

6

1.28

1.28

26.6

-1.91

-0.30

24.1

75

3

2

1

2

1

0

0

7

1.44

1.61

28.2

-2.10

-0.33

25.3

74

3

2

1

3

1

0

0

8

1.28

1.28

32.6

-1.24

0.03

18.5

79

4

2

2

4

1

1

0

9

1.44

1.61

34.2

-1.31

0.07

19.6

77

4

2

1

5

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.