PDBsum entry 4msd Go to PDB code:  Tunnel analysis for: 4msd calculated with MOLE 2.0 PDB id 4msd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.32 22.2 -0.37 -0.17 16.1 86 2 1 0 4 0 0 1   2 1.28 1.57 23.3 -0.61 -0.34 17.0 86 4 2 1 3 0 0 1   3 1.28 1.60 37.5 -0.79 -0.13 19.4 82 3 2 3 5 2 0 1  EDO 508 B 4 1.24 1.23 38.7 -0.37 -0.14 16.5 81 3 3 2 4 3 0 2  EDO 504 B EDO 509 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.