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PDBsum entry 4mrr

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Pore analysis for: 4mrr calculated with MOLE 2.0 PDB id
4mrr
Pores calculated on whole structure Pores calculated excluding ligands

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11 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.18 1.29 30.1 -1.14 -0.26 20.5 78 2 2 0 7 0 2 0  MSE 45 B
2 1.73 2.21 44.5 2.32 0.75 5.7 69 3 1 0 16 3 0 0  MSE 154 A MSE 332 A MSE 335 A LDA 701 A LDA 701 B
3 1.39 3.99 45.3 2.09 0.67 6.7 72 3 1 0 13 3 0 0  LDA 702 A MSE 154 B MSE 332 B MSE 335 B LDA 702 B
4 1.32 1.35 49.5 -0.78 -0.10 19.9 73 4 2 1 8 3 2 0  MSE 280 A MSE 45 B
5 1.24 1.43 52.6 -0.02 -0.01 11.6 81 5 3 3 10 3 0 0  MSE 213 A MSE 317 A MSE 320 A MSE 703 A PO4 706 A
MSE 317 B MSE 320 B MSE 703 B
6 1.20 1.42 54.5 -1.50 -0.37 19.4 78 7 3 3 5 2 2 0  MSE 213 A MSE 317 A MSE 320 A MSE 703 A PO4 706 A
MSE 45 B MSE 317 B
7 1.30 2.92 54.7 0.08 0.05 12.9 77 2 3 1 11 4 1 0  MSE 280 A MSE 703 A MSE 317 B MSE 703 B
8 1.26 1.45 59.6 -2.25 -0.58 25.7 83 9 6 4 4 1 0 0  MSE 213 A
9 1.31 1.49 61.5 -0.13 -0.04 12.0 85 6 3 2 9 2 0 0  MSE 213 A LDA 702 A MSE 335 B LDA 702 B
10 1.60 1.73 62.2 -0.55 0.04 20.2 79 6 3 2 7 2 0 0  LDA 701 A LDA 701 B
11 1.20 1.40 62.9 -0.90 -0.20 17.1 78 6 3 3 9 3 1 0  MSE 213 A MSE 280 A MSE 317 A MSE 320 A MSE 703 A
PO4 706 A MSE 317 B
12 1.31 2.90 64.6 -1.32 -0.18 22.6 81 8 4 3 8 3 0 0  MSE 317 A MSE 320 A MSE 317 B MSE 320 B MSE 703 B
PO4 706 B
13 1.27 1.46 70.1 -1.09 -0.27 18.7 77 8 6 3 8 2 0 0  MSE 213 A LDA 701 A LDA 701 B
14 1.37 1.42 71.4 -2.06 -0.28 27.6 79 13 5 3 3 3 2 0  MSE 317 A MSE 320 A MSE 703 A PO4 706 A MSE 45 B
MSE 317 B MSE 320 B PO4 706 B
15 1.22 1.43 79.2 -1.81 -0.41 21.4 83 8 5 4 5 2 0 0  MSE 213 A LDA 701 A
16 1.30 1.36 79.7 -1.52 -0.15 24.8 79 12 5 3 7 4 1 0  MSE 280 A MSE 317 A MSE 320 A MSE 703 A PO4 706 A
MSE 317 B MSE 320 B PO4 706 B
17 1.61 1.73 80.5 -2.80 -0.55 34.0 84 10 5 5 3 1 0 0  LDA 701 A
18 1.61 1.73 81.7 0.74 0.30 12.5 76 4 4 2 15 2 0 0  MSE 154 A MSE 332 A MSE 335 A LDA 701 A LDA 701 B
19 1.27 1.44 83.4 0.20 0.09 13.3 75 6 6 3 16 3 0 0  MSE 154 A MSE 213 A MSE 332 A MSE 335 A LDA 701 A
LDA 701 B
20 1.22 2.72 83.6 -0.90 0.05 24.1 77 11 5 3 12 4 0 0  MSE 317 A MSE 320 A LDA 701 A PO4 706 A MSE 317 B
MSE 320 B LDA 701 B MSE 703 B PO4 706 B
21 1.32 1.98 86.6 -1.14 -0.02 22.8 81 10 3 4 9 4 0 0  MSE 317 A MSE 320 A LDA 701 A PO4 706 A MSE 317 B
MSE 320 B MSE 703 B PO4 706 B
22 1.33 1.41 88.4 -1.66 -0.11 27.7 75 12 6 3 7 4 2 0  MSE 317 A MSE 320 A LDA 701 A MSE 703 A PO4 706 A
MSE 45 B MSE 317 B MSE 320 B LDA 701 B
23 1.79 2.12 90.9 -0.50 -0.01 21.9 76 8 7 4 14 2 0 0  MSE 154 A MSE 332 A MSE 335 A LDA 701 A LDA 701 B
24 1.36 1.43 91.4 -1.91 -0.19 26.9 79 11 4 4 4 4 2 0  MSE 317 A MSE 320 A LDA 701 A MSE 703 A PO4 706 A
MSE 45 B MSE 317 B MSE 320 B
25 1.31 1.35 96.8 -1.09 0.01 24.3 75 11 6 3 11 5 1 0  MSE 280 A MSE 317 A MSE 320 A LDA 701 A MSE 703 A
PO4 706 A MSE 317 B MSE 320 B LDA 701 B
26 1.34 1.35 99.8 -1.44 -0.07 25.1 79 10 4 4 8 5 1 0  MSE 280 A MSE 317 A MSE 320 A LDA 701 A MSE 703 A
PO4 706 A MSE 317 B MSE 320 B
27 1.35 1.43 108.7 -0.28 0.17 19.8 72 9 6 3 16 6 2 0  MSE 154 A MSE 317 A MSE 320 A MSE 332 A MSE 335 A
LDA 701 A MSE 703 A PO4 706 A MSE 45 B MSE 317 B
MSE 320 B LDA 701 B
28 1.27 3.94 114.0 -2.14 -0.22 31.6 77 16 5 2 4 4 2 0  MSE 317 A MSE 320 A LDA 702 A MSE 703 A PO4 706 A
MSE 45 B MSE 317 B MSE 320 B LDA 702 B PO4 706 B
29 2.13 3.27 115.3 -1.49 -0.33 26.6 79 14 9 2 10 2 0 0  LDA 701 A LDA 702 A LDA 701 B LDA 702 B
30 1.46 4.00 130.7 -1.76 -0.41 26.3 84 14 7 3 7 2 0 0  LDA 701 A LDA 702 A LDA 702 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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