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PDBsum entry 4mrp
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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 4mrp calculated with MOLE 2.0 PDB id
4mrp
Pores calculated on whole structure Pores calculated excluding ligands
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15 pores, coloured by radius 27 pores, coloured by radius 27 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.21 1.21 40.7 -1.27 -0.52 16.8 82 4 3 3 2 2 0 0  
2 1.32 1.37 50.0 -1.04 -0.23 19.7 75 5 2 1 8 3 2 0  MSE 280 A GSH 703 A MSE 45 B MSE 317 B
3 1.22 1.22 58.6 -1.70 -0.38 21.7 71 6 4 2 4 6 4 0  MSE 45 A MSE 317 A MSE 320 A GSH 703 A MSE 45 B
MSE 317 B MSE 320 B GSH 703 B
4 1.17 1.17 58.6 -0.60 -0.25 14.6 82 5 3 2 6 2 0 0  LDA 702 A
5 1.28 1.28 67.3 -1.18 -0.21 20.9 74 5 4 2 8 6 2 0  MSE 45 A MSE 280 A MSE 317 A MSE 320 A GSH 703 A
MSE 317 B MSE 320 B GSH 703 B
6 1.22 2.26 73.6 -0.10 -0.20 11.1 91 5 4 5 11 1 0 0  MSE 540 A
7 2.31 2.36 74.5 -2.89 -0.62 30.8 85 12 8 6 3 1 0 0  
8 1.70 2.09 76.0 -2.16 -0.67 25.7 88 8 4 3 4 0 0 0  
9 1.18 1.20 90.8 0.61 0.10 9.9 76 5 3 2 17 3 0 0  LDA 702 A MSE 154 B MSE 332 B MSE 335 B LDA 702 B
10 1.78 2.35 92.6 -0.11 0.04 16.0 79 7 6 3 17 3 0 0  MSE 154 A MSE 332 A MSE 335 A LDA 701 A LDA 701 B
11 1.44 2.31 96.4 0.40 0.21 15.7 76 6 4 2 13 1 1 0  LDA 702 A MSE 154 B MSE 332 B MSE 335 B LDA 702 B
12 1.27 1.27 100.6 -2.32 -0.36 27.7 80 16 8 5 4 5 2 0  MSE 45 A MSE 317 A MSE 320 A GSH 703 A MSE 317 B
MSE 320 B GSH 703 B
13 1.31 1.31 100.4 -2.23 -0.42 26.1 81 13 8 5 5 4 2 0  MSE 317 A MSE 320 A GSH 703 A MSE 45 B MSE 317 B
MSE 320 B GSH 703 B
14 1.16 1.18 101.9 -2.43 -0.66 28.1 88 6 8 4 2 1 0 0  PO4 704 A
15 1.22 1.21 104.4 -0.21 0.11 17.0 74 8 5 3 16 6 2 0  MSE 45 A MSE 317 A MSE 320 A LDA 702 A GSH 703 A
MSE 154 B MSE 317 B MSE 320 B MSE 332 B MSE 335 B
LDA 702 B GSH 703 B
16 1.39 1.39 105.9 -0.39 0.07 17.6 74 9 5 3 16 5 2 0  MSE 317 A MSE 320 A LDA 702 A GSH 703 A MSE 45 B
MSE 154 B MSE 317 B MSE 320 B MSE 332 B MSE 335 B
LDA 702 B GSH 703 B
17 1.31 1.31 106.7 -2.20 -0.21 29.4 77 13 5 4 3 4 3 0  MSE 45 A MSE 317 A MSE 320 A GSH 703 A MSE 317 B
MSE 320 B GSH 703 B
18 1.27 1.28 108.2 -2.15 -0.22 28.8 77 14 5 4 3 3 3 0  MSE 317 A MSE 320 A GSH 703 A MSE 45 B MSE 317 B
MSE 320 B GSH 703 B
19 1.30 1.38 110.1 -1.96 -0.29 26.7 81 15 8 5 8 5 0 0  MSE 280 A MSE 317 A MSE 320 A GSH 703 A MSE 317 B
MSE 320 B GSH 703 B
20 1.32 1.38 117.5 -1.68 -0.10 27.4 79 14 5 4 7 4 1 0  MSE 280 A MSE 317 A MSE 320 A GSH 703 A MSE 317 B
MSE 320 B GSH 703 B
21 1.64 2.11 121.7 -2.15 -0.64 24.1 88 11 10 7 8 1 0 0  
22 1.89 1.87 128.6 -0.47 -0.17 15.8 81 7 10 4 19 2 0 0  LDA 702 A MSE 154 B MSE 332 B MSE 335 B LDA 702 B
23 1.50 2.33 134.1 0.27 0.19 16.5 74 11 7 3 28 4 0 0  MSE 154 A MSE 332 A MSE 335 A LDA 701 A LDA 702 A
MSE 154 B MSE 332 B MSE 335 B LDA 701 B LDA 702 B
24 1.38 2.19 136.4 -0.89 -0.02 24.6 77 16 7 4 15 2 1 0  MSE 154 A MSE 332 A MSE 335 A LDA 701 A LDA 701 B
25 1.67 2.11 135.6 -0.65 -0.23 18.6 80 10 6 3 17 1 0 0  LDA 702 A MSE 154 B MSE 332 B MSE 335 B LDA 702 B
26 1.69 2.12 139.5 -0.79 -0.25 19.7 81 13 7 5 20 2 0 0  MSE 154 A MSE 332 A MSE 335 A LDA 701 A LDA 701 B
27 1.29 2.81 191.3 -1.16 -0.25 21.7 84 22 12 8 19 5 0 0  MSE 280 A MSE 317 A MSE 320 A MSE 540 A GSH 703 A
MSE 317 B MSE 320 B GSH 703 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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