spacer
spacer

PDBsum entry 4mo4

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 4mo4 calculated with MOLE 2.0 PDB id
4mo4
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
8 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.09 2.63 54.8 -1.15 -0.46 15.4 79 5 2 2 5 0 2 0  
2 1.61 1.64 59.9 -0.69 -0.17 16.1 85 6 2 3 11 2 1 0  
3 1.96 1.92 86.7 -1.97 -0.54 20.9 82 4 4 4 2 1 4 0  
4 1.96 1.96 89.9 -1.25 -0.40 16.5 80 4 5 6 3 5 5 0  
5 1.38 1.75 92.1 -0.91 -0.25 15.8 81 7 4 5 11 4 3 0  
6 1.39 1.82 93.0 -0.73 -0.20 16.4 80 9 3 6 14 2 2 0  
7 1.59 1.68 94.8 -0.59 -0.22 15.2 83 6 5 5 12 3 1 0  
8 1.56 1.60 100.3 -0.80 -0.26 15.4 86 6 4 6 13 3 2 0  
9 1.38 1.84 146.7 -0.96 -0.27 14.4 80 8 8 12 16 7 3 0  ACP 500 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer