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PDBsum entry 4mf0

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protein ligands Protein-protein interface(s) links
Transferase/transferase inhibitor PDB id
4mf0

 

 

 

 

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Contents
Protein chains
240 a.a.
Ligands
29Z ×2
Waters ×25
PDB id:
4mf0
Name: Transferase/transferase inhibitor
Title: Itk kinase domain in complex with benzothiazole inhibitor compound 12a (1s,2s)-2-{4-[(dimethylamino)methyl]phenyl}-n-[6-(pyridin-3-yl)-1,3- benzothiazol-2-yl]cyclopropanecarboxamide (12a)
Structure: Tyrosine-protein kinase itk/tsk. Chain: a, b. Fragment: unp residues 357-620. Synonym: interleukin-2-inducible t-cell kinase, il-2-inducible t-cell kinase, kinase emt, t-cell-specific kinase, tyrosine-protein kinase lyk. Engineered: yes. Mutation: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: emt, itk, lyk. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108
Resolution:
2.67Å     R-factor:   0.215     R-free:   0.268
Authors: C.Eigenbrot,S.Shia
Key ref: C.H.MacKinnon et al. (2013). Structure-based design and synthesis of potent benzothiazole inhibitors of interleukin-2 inducible T cell kinase (ITK). Bioorg Med Chem Lett, 23, 6331-6335. PubMed id: 24138940 DOI: 10.1016/j.bmcl.2013.09.069
Date:
27-Aug-13     Release date:   13-Nov-13    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q08881  (ITK_HUMAN) -  Tyrosine-protein kinase ITK/TSK from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
620 a.a.
240 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.2.7.10.2  - non-specific protein-tyrosine kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H+
L-tyrosyl-[protein]
+ ATP
= O-phospho-L-tyrosyl-[protein]
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Added reference    
 
 
DOI no: 10.1016/j.bmcl.2013.09.069 Bioorg Med Chem Lett 23:6331-6335 (2013)
PubMed id: 24138940  
 
 
Structure-based design and synthesis of potent benzothiazole inhibitors of interleukin-2 inducible T cell kinase (ITK).
C.H.MacKinnon, K.Lau, J.D.Burch, Y.Chen, J.Dines, X.Ding, C.Eigenbrot, A.Heifetz, A.Jaochico, A.Johnson, J.Kraemer, S.Kruger, T.M.Krülle, M.Liimatta, J.Ly, R.Maghames, C.A.Montalbetti, D.F.Ortwine, Y.Pérez-Fuertes, S.Shia, D.B.Stein, G.Trani, D.G.Vaidya, X.Wang, S.M.Bromidge, L.C.Wu, Z.Pei.
 
  ABSTRACT  
 
Inhibition of the non-receptor tyrosine kinase ITK, a component of the T-cell receptor signalling cascade, may represent a novel treatment for allergic asthma. Here we report the structure-based optimization of a series of benzothiazole amides that demonstrate sub-nanomolar inhibitory potency against ITK with good cellular activity and kinase selectivity. We also elucidate the binding mode of these inhibitors by solving the X-ray crystal structures of several inhibitor-ITK complexes.
 

 

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