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PDBsum entry 4mdz
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Tunnel analysis for: 4mdz calculated with  MOLE 2.0
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PDB id
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4mdz
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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6 tunnels,
coloured by tunnel radius |
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9 tunnels,
coloured by
tunnel radius
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9 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.17 |
2.20 |
23.8 |
-1.05 |
-0.23 |
7.8 |
88 |
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2 |
2 |
5 |
3 |
2 |
0 |
0 |
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2 |
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1.16 |
2.20 |
38.7 |
-1.42 |
-0.20 |
11.6 |
84 |
3 |
4 |
4 |
4 |
3 |
0 |
0 |
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3 |
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1.16 |
2.20 |
41.3 |
-1.50 |
-0.28 |
12.7 |
86 |
1 |
5 |
5 |
4 |
3 |
0 |
0 |
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4 |
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1.16 |
2.20 |
43.5 |
-1.39 |
-0.19 |
14.5 |
82 |
4 |
3 |
4 |
6 |
3 |
0 |
0 |
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5 |
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2.82 |
4.08 |
17.7 |
-1.50 |
0.43 |
26.0 |
72 |
6 |
0 |
0 |
3 |
3 |
0 |
0 |
C2E 402 B
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6 |
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2.78 |
4.04 |
20.5 |
-1.36 |
0.16 |
14.8 |
70 |
4 |
0 |
0 |
2 |
2 |
3 |
0 |
C2E 402 B
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7 |
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1.50 |
1.50 |
28.1 |
-1.46 |
-0.28 |
19.2 |
80 |
4 |
1 |
1 |
2 |
2 |
1 |
0 |
C2E 402 B
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8 |
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1.48 |
1.90 |
21.3 |
-2.97 |
-0.87 |
39.3 |
78 |
3 |
6 |
0 |
0 |
0 |
1 |
0 |
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9 |
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1.57 |
2.17 |
22.2 |
-2.99 |
-0.85 |
39.6 |
75 |
3 |
6 |
0 |
0 |
1 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program