 |
PDBsum entry 4m9e
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4m9e calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4m9e
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
3 pores,
coloured by radius |
|
5 pores,
coloured by radius
|
5 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.53 |
1.54 |
25.2 |
-2.23 |
-0.66 |
24.4 |
92 |
|
5 |
1 |
2 |
0 |
0 |
0 |
0 |
|
ACT 502 A DG 1 B DA 2 B DA 4 C 5CM 5 C DG 6 C
|
 |
|
2 |
 |
1.18 |
1.22 |
31.3 |
-2.12 |
-0.51 |
24.4 |
92 |
6 |
1 |
4 |
1 |
1 |
0 |
0 |
ACT 502 A DG 1 C DC 2 C DC 3 C DA 4 C 5CM 5 C DG
6 C
|
|
3 |
 |
1.36 |
1.36 |
32.4 |
-1.29 |
-0.47 |
15.6 |
91 |
4 |
0 |
3 |
1 |
1 |
0 |
0 |
DG 4 B 5CM 5 B DG 6 B DT 7 B DG 1 C DC 2 C DC 3 C
DT 9 C DC 10 C
|
|
4 |
 |
1.29 |
1.29 |
38.4 |
-1.84 |
-0.72 |
20.4 |
83 |
6 |
1 |
1 |
0 |
0 |
0 |
0 |
DG 1 B DA 2 B DG 3 B DG 4 B 5CM 5 B DG 6 B DT 9 C
DC 10 C
|
 |
5 |
 |
1.14 |
1.25 |
48.8 |
-1.92 |
-0.67 |
22.9 |
94 |
5 |
1 |
2 |
1 |
0 |
0 |
0 |
ACT 502 A DG 4 B 5CM 5 B DG 6 B DT 7 B DC 3 C DA
4 C 5CM 5 C DG 6 C DT 9 C DC 10 C
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program