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PDBsum entry 4m1m

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Pore analysis for: 4m1m calculated with MOLE 2.0 PDB id
4m1m
Pores calculated on whole structure Pores calculated excluding ligands

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13 pores, coloured by radius 20 pores, coloured by radius 20 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.63 2.54 30.5 1.17 0.21 2.6 96 1 1 2 10 1 0 0  
2 1.78 1.77 41.4 0.32 0.03 10.3 90 1 2 5 6 1 2 1  HG 1302 B
3 0.93 1.55 43.3 -0.58 -0.18 14.2 85 1 3 3 3 1 1 1  HG 1302 B
4 1.33 2.47 50.5 0.35 0.04 9.5 88 0 1 3 12 3 0 0  
5 0.94 1.56 50.8 -1.60 -0.26 24.0 81 3 3 2 2 1 1 1  HG 1302 B
6 1.10 1.26 52.8 0.86 0.03 1.8 92 0 0 6 15 1 0 0  
7 0.91 1.55 57.1 -0.91 -0.04 18.1 81 4 3 3 5 2 4 1  HG 1302 B
8 1.22 1.16 80.6 -0.58 -0.13 21.7 85 4 8 2 10 3 0 0  HG 1305 A
9 1.22 1.22 81.3 0.95 0.24 6.4 85 1 2 6 17 4 1 0  
10 1.31 1.41 89.2 -0.98 -0.12 24.4 84 7 9 3 12 4 0 0  HG 1305 A
11 1.35 1.41 90.2 -1.50 -0.31 23.5 87 7 7 7 12 1 1 0  
12 1.63 2.00 130.2 -1.07 -0.36 14.9 88 8 7 12 13 1 1 0  
13 1.16 1.30 139.2 -0.47 -0.20 13.8 87 8 7 11 18 2 1 0  
14 1.57 1.69 158.2 -0.71 -0.17 15.7 85 9 9 11 17 4 2 0  
15 1.11 2.03 157.6 -0.63 -0.30 13.5 87 7 8 12 14 3 2 1  HG 1302 A HG 1306 A
16 1.91 1.92 181.5 -0.76 -0.33 15.6 88 8 10 13 18 2 7 1  HG 1302 B
17 1.19 2.33 195.5 -1.05 -0.47 18.2 91 9 10 11 19 1 4 0  
18 1.66 1.74 208.5 -0.54 -0.32 13.8 90 7 10 15 24 1 5 1  HG 1302 B
19 1.22 1.28 466.5 -1.39 -0.34 21.9 84 25 31 24 38 8 9 1  HG 1302 B
20 1.20 1.68 483.5 -1.51 -0.34 22.7 84 32 35 24 34 9 4 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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