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PDBsum entry 4lz4

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 4lz4 calculated with MOLE 2.0 PDB id
4lz4
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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3 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.35 1.35 21.5 -1.68 -0.81 20.9 89 3 5 1 0 1 1 0  NA 303 B
2 1.38 1.37 27.0 -0.84 -0.21 12.9 77 2 4 2 2 3 0 0  0G6 302 B
3 1.35 1.35 31.1 -1.58 -0.54 18.8 86 3 4 3 0 1 0 0  0G6 302 B
4 1.35 1.35 23.4 -1.72 -0.79 21.1 86 3 5 1 0 1 1 0  NA 303 D
5 1.35 1.35 27.4 -0.94 -0.24 14.4 74 2 4 2 2 3 0 0  0G6 302 D
6 1.36 1.36 31.0 -1.70 -0.55 20.6 85 3 4 3 0 1 0 0  0G6 302 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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