PDBsum entry 4lsg

Pore analysis for: 4lsg calculated with

MOLE 2.0

PDB id

4lsg

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

7 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.19

1.55

35.4

1.77

0.38

5.3

80

2

2

4

14

0

2

1

2

1.47

1.56

38.6

0.25

-0.06

13.4

85

1

3

1

8

2

0

0

3

1.22

1.63

43.1

1.70

0.28

1.6

80

0

1

6

13

0

2

1

4

1.29

2.44

49.7

-1.15

-0.29

18.6

80

4

4

2

5

2

0

1

5

1.34

1.53

54.9

-0.68

-0.11

15.3

79

5

4

3

10

2

0

1

6

1.21

1.35

56.5

-0.02

-0.08

9.8

84

1

2

5

12

4

1

0

7

1.23

1.46

205.7

-0.87

-0.24

11.6

82

8

10

14

20

6

5

1

8

1.19

1.80

201.0

-0.39

-0.05

12.3

81

13

10

12

30

5

2

1

9

1.21

1.31

213.0

-0.36

-0.09

10.5

82

7

11

15

28

5

5

2

HG 1304 A

10

1.42

1.52

223.5

-1.96

-0.29

26.4

77

24

17

11

18

11

1

1

11

1.18

2.28

243.2

-1.36

-0.23

22.2

79

22

17

17

24

13

1

1

12

1.16

1.16

299.3

-1.04

-0.23

15.2

78

18

14

15

27

11

4

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.